Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_0841 |
Symbol | |
ID | 4483421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | + |
Start bp | 1046510 |
End bp | 1050748 |
Gene Length | 4239 bp |
Protein Length | 1412 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639721589 |
Product | DNA-directed RNA polymerase, beta' subunit |
Protein accession | YP_864766 |
Protein GI | 117924149 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00107852 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACACCGG TTAGCGATGC GCCTGCAACA CCTAGCTCGG AAATTTCTGC GGCTGGGCAG AGCGTTTTTA AGCTGTTCTC CCGGCCTATG CTGGGGCAGA GCTTCGATGG TATCCGTATC TCGATTGCTT CACCTGAGAA GATTCGTTCT TGGTCTTTTG GCGAAGTAAA AAAGCCAGAG ACCATCAACT ATCGTACCTT TAAGCCGGAG CGCGATGGTC TTTTTTGTGC CAAAATCTTT GGCCCCGTAA AAGATTATGA GTGTCTGTGT GGCAAGTATA AGCGTCTCAA ACACCGTGGT GTGGTGTGTG AAAAGTGCGG CGTTGAGGTG ATCCAATCCA AAGTGCGCCG TGAGCGCATG GGTCACATTG AACTGGCCGC GCCTGTGGCG CACATCTGGT TCCTCAAATC CCTGCCCAGC CGGATTGGTC TGCTGTTGGA TATGACCTTG AAGGATCTGG AGCGGGTTCT CTACTTTGAG AACTTTGTGG TACTAGAGAG TGGCATGACC CCCATGAAGC GCGGGGAGCT GCTGACCGAA GACCGCTACT ACCAGCTTAT AGAAGAGTTT GGTGACGAGT TCCGCGCCGG TATTGGTGCC GAAGCCATCC GCGAAATGTT GGTGGATCTC AAAATACCCG AAGAGATCAA TCAACTGCGG GACGAACTGC GTGATACCAG TTCCGAAGCG CGTCGTAAAA AGATTGTCAA ACGGTTGCAT ACCCTGGAGG CCTTTCAGGA TTCCAAAAAC TCACCTGAGT GGATGATTTT GGAGGTGATT CCGGTTATCC CCCCCGAGCT GCGCCCCTTG GTGCCGCTGG ATGGTGGGCG TTTTGCGACC TCCGATTTGA ACGATCTCTA CCGTCGCGTG ATCAACCGTA ACAACCGCCT CAAGCGCCTG TTTGAGCTCA AGGCACCGGA TATTATCATC CGCAATGAAA AGCGTATGTT GCAGGAGTCA GTGGACGCCC TGTTTGATAA TGGTCGTCGT GGTCGTGTGA TTACCGGCAC CAATAAGCGA CCGCTGAAAT CCTTATCCGA GATGCTCAAG GGTAAGCAGG GCCGTTTCCG CTTGAACTTG CTGGGTAAGC GGGTCGACTA TTCGGGTCGT TCCGTGATCG TGGTGGGTCC TGAGCTTAAA TTGCACGAGT GCGGCTTGCC CAAAAAGATG GCGCTGGAAC TGTTCAAACC CTTCATCTAC AACCGTCTCG AAGAGCGTGG CCTAGCCACC ACCATCAAGG CGGCCAAGCG TATGGTGGAA AAAGAGAAGG GGGAAGTGTG GGATATTTTG GAAGAGGTGA TCCGGGAACA CCCGGTTATG CTCAACCGCG CACCCACCCT GCACCGTTTG GGTATTCAAG CCTTTGAACC TAAACTGGTG GAAGGCAAGG CCATTCAGTT GCACCCGCTG GTGTGTACCG CTTTTAACGC CGACTTTGAC GGTGACCAAA TGGCGGTACA CGTGCCCCTC TCCATTGAGG CACAAATTGA AGCGCGGGTG TTGATGATGT CCACCAACAA CATCCTCTCT CCCGCCAACG GTAAGCCGAT TATTGTGCCG ACGCAGGATA TCATTCTGGG TCTCTACTAT ATGACCTCAG AGCGGGCCAA TGTGGCTGGC GAGGGTATGA TCTTCAGCAA TACGATGGAG GTTAAACAGG CCTTTGATGC TGGGGTTGCT AACCTGCATG CTTCCATCCA GTGTCGTTTC CGGGGTAAGC GGGTGCATAC CACGGTGGGT CGTATGTTGT TGGCCGATAT GCTGCCAGAA CGGATTGATT TCCAGGCGAT TAACAAGCTT ATCACCAAAA AAGAGGTGAC CAAGCTGATC GACCATACCT ACCGTATGTG TGGTACTAAA GATACGGTAA TCTTTACCGA TCGTCTGATG GCTATGGGCT TTGCCTTCGC CTGTCGGGCC GGTATCTCTT TCGGTAAAGA TGACATGGTT ATTCCTGAAG CCAAGCGTAA GTTGGTCGAC GCTGCCCAGG AGAAGGTGAA AGAGATTGAA AAGCAGTACA CTGACGGTCT GATCACCGAG GGTGAAAAAT ATAACAAGGT GGTGGATATC TGGTCGCACT GCACGGAGCG GGTGGCCGAT GAGATGATGG GTACCATCTC TACCGATACG GTCTTGAACA AAGATGGCGA AATGGTGGAG CAACCCTCCT TTAACTCCAT CTTTATGATG GCCAACTCCG GCGCCCGGGG TTCAGCCGCG CAGATGCGTC AGTTGGCGGG TATGCGTGGT CTGATGGCAA AACCATCGGG TGAGATCATG GAGACCCCCA TCACGGCAAA CTTCCGTGAG GGGTTGACGG TTCTTCAGTA CTTTATCTCT ACCCACGGTG CCCGTAAGGG TCTGGCCGAT ACCGCTTTGA AGACGGCCAA CTCCGGTTAT CTAACCCGCC GTTTGGTGGA CGTGGCGCAG GATTGTATTG TCCGTGAAGA GGATTGCGGT ACCTCTATCG GCATCACCGT GGCGGCACTG GTGGAAGGTA ATGATGTGGT AGAAACCCTG GGCGACCGTC TGTTGGGTCG TACCCCGGTG AGTGATATCA AGGATCCCAT CACCGATGAG CTGCTGGTTA AAGCAGGCAC CATCATGGAT GAGGATATCG TTGAGAAGAT CGAAAACTCC AATGTGGACT CGGTGCTGAT TCGTTCACCA CTAACCTGCG AGACCACTCG CGGCGTTTGT GTCACCTGCT ATGGTCGTGA TCTGGCGCGT GGTACCCGCG TGACGGTAGG TGAAGCGGTT GGGGTGATCG CGGCACAATC TATTGGTGAG CCCGGTACCC AGTTGACCAT GCGTACCTTC CACATCGGTG GTACGGCATC CCGTCAAGCG GAACAGTCTC ACCAAGAGAC CACCCATGGT GGTGTGCTCA AGTTTCATGA CCTGATTACG GTGCAGGATC GTGCGGGTCG GTATGTGGTG CTCTCTCGCA ACAGTGAGGT CTCTTTACAC GAAGCGGTTG AGCATGAGGG TCAGGTTGAA GCGGGTCGTG AGCGCGAGCG TTACCGTATT CCCTACGGCG CGCGTATCTC TAGTGCACCG GGCTCGGTGG TGGAGAAGGG CACGACCTTT GCTGAGTGGG ATCCCTTCGC CATGCCCATT ATCACGGAGG TAGAGGGGAT CGTTAAGTTT GGCGATCTGG TGGATGGTGT CTCCTTGCGG GAAAACATGG ATGATACCAC CGGCTTGATC TCCAAAGAGG TGACAGAGTG GAAGGGTCAA AGCTCCAAGA AGGGTGATAT GCGTCCCCGT ATTACCCTGA AGGATGTGAA CAGCAATGAG ACGCTGATGA TGCCCAATGG TAGCGAATGC CGCTATTATC TGCCGGTTGG CGCCGTGATT GTCGTCAACG AGGGGGATCA TGTACATGGC GGTGATATCA TTGCTAAGGT GTTGCGTCAG TCGACTAAAA ACCGCGACAT TACTGGTGGT TTGCCACGGG TCGTGGAGCT GTTTGAGGCC CGTAAGCCTA AAGAGCACTC CTTCATTGCG GAAAATGAGG GTATGGTCAC CTATGGTAAG GATCTCAAAG GTAAGCGTCG TTTGGTGGTG ACACCCGATA GTGGCGAGCC TATGGAGTAT CTGTTGCCTA AGGGTAAGCA GCTTGCGGTG AACGAGGGCG ACTGGGTGCG TAAGGGCGAA CCCTTGATGG AGGGCTCACC GGTACCTCAG GACATTCTCA AGGTGTTGGG CTTGGAAGAG TTGTGCCGCT TTATGGTCAA CGAAATTCAA GAGGTCTACC GGTTGCAAGG TGTGCGTATC AACGATAAGC ACATTGAGGT GATCGTTCGC CAAATGTTGC AGAAGGTGCA GATTACCGAT CCGGGTGACA CCATGTTTGT CAGTGGTGAG CAGGTAGAAA AAGATGACTA CCTGTTGGAG AACGTCAAGA CCGATAAGCG CGGTGGTCGT GTGGCGACCT GTACACCGCT ACTGCTGGGC ATTACCAAGG CCTCGCTCTC TACCCCTTCT TTCATCTCGG CGGCCTCCTT CCAGGAGACC ACACGGGTGC TGACTGAAGC GGCGATCTCC GGTCGTGTGG ATACCCTCAA TGGCTTAAAA GAGAATGTCA TTGTGGGACG TCTGATCCCT GCTGGTACGG GGAATATTTT GTCGCAGTTG AAAAAGATGG GCAGTTTGAC CAAAGGAGAA AAATCTACTC AAGGTGGCGA GCAACACGTT GCCAAGGTAG CCAGCTCCAG TGAAGTTACT GAAGGATAA
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Protein sequence | MTPVSDAPAT PSSEISAAGQ SVFKLFSRPM LGQSFDGIRI SIASPEKIRS WSFGEVKKPE TINYRTFKPE RDGLFCAKIF GPVKDYECLC GKYKRLKHRG VVCEKCGVEV IQSKVRRERM GHIELAAPVA HIWFLKSLPS RIGLLLDMTL KDLERVLYFE NFVVLESGMT PMKRGELLTE DRYYQLIEEF GDEFRAGIGA EAIREMLVDL KIPEEINQLR DELRDTSSEA RRKKIVKRLH TLEAFQDSKN SPEWMILEVI PVIPPELRPL VPLDGGRFAT SDLNDLYRRV INRNNRLKRL FELKAPDIII RNEKRMLQES VDALFDNGRR GRVITGTNKR PLKSLSEMLK GKQGRFRLNL LGKRVDYSGR SVIVVGPELK LHECGLPKKM ALELFKPFIY NRLEERGLAT TIKAAKRMVE KEKGEVWDIL EEVIREHPVM LNRAPTLHRL GIQAFEPKLV EGKAIQLHPL VCTAFNADFD GDQMAVHVPL SIEAQIEARV LMMSTNNILS PANGKPIIVP TQDIILGLYY MTSERANVAG EGMIFSNTME VKQAFDAGVA NLHASIQCRF RGKRVHTTVG RMLLADMLPE RIDFQAINKL ITKKEVTKLI DHTYRMCGTK DTVIFTDRLM AMGFAFACRA GISFGKDDMV IPEAKRKLVD AAQEKVKEIE KQYTDGLITE GEKYNKVVDI WSHCTERVAD EMMGTISTDT VLNKDGEMVE QPSFNSIFMM ANSGARGSAA QMRQLAGMRG LMAKPSGEIM ETPITANFRE GLTVLQYFIS THGARKGLAD TALKTANSGY LTRRLVDVAQ DCIVREEDCG TSIGITVAAL VEGNDVVETL GDRLLGRTPV SDIKDPITDE LLVKAGTIMD EDIVEKIENS NVDSVLIRSP LTCETTRGVC VTCYGRDLAR GTRVTVGEAV GVIAAQSIGE PGTQLTMRTF HIGGTASRQA EQSHQETTHG GVLKFHDLIT VQDRAGRYVV LSRNSEVSLH EAVEHEGQVE AGRERERYRI PYGARISSAP GSVVEKGTTF AEWDPFAMPI ITEVEGIVKF GDLVDGVSLR ENMDDTTGLI SKEVTEWKGQ SSKKGDMRPR ITLKDVNSNE TLMMPNGSEC RYYLPVGAVI VVNEGDHVHG GDIIAKVLRQ STKNRDITGG LPRVVELFEA RKPKEHSFIA ENEGMVTYGK DLKGKRRLVV TPDSGEPMEY LLPKGKQLAV NEGDWVRKGE PLMEGSPVPQ DILKVLGLEE LCRFMVNEIQ EVYRLQGVRI NDKHIEVIVR QMLQKVQITD PGDTMFVSGE QVEKDDYLLE NVKTDKRGGR VATCTPLLLG ITKASLSTPS FISAASFQET TRVLTEAAIS GRVDTLNGLK ENVIVGRLIP AGTGNILSQL KKMGSLTKGE KSTQGGEQHV AKVASSSEVT EG
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