| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0722 |
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| Symbol | |
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| ID | 4480568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 868585 |
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| End bp | 869934 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639721465 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_864649 |
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| Protein GI | 117924032 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.278359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.698539 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTGATT CACGTTATGA ATTCACGGTT AGCAGTGTGC TAAAACCAGC GCGTTGGGCA
TTTTTGGCGG CGCTTGTAGT GGGTTTACCG CTTGGTGCGT TACAGGCGCA GGAGCAGCAC
CCCTTCGCCG CAGCAGTGAT GCAGGCTTTG CAGACAAATC CCGATGTTCG CTCCAGTCGA
GCCAGTCTGG ATAGTGCCAA AGAGAAGCCG GTTGGTACCA CGGCGGCATT GCGACCAACC
ATAACTTTTA CCAGTACAGC CACCCACACG GCCAGTTTTT ATGGTACCAC CAAAAGCAAA
TCAGACCCAC GTGCGTACAA GTTGGATCTC AGTCAGCCCA TCTACAACAA ACAGCTCTTT
GTGGCCGATG AACAGGCGAT GCCCTATGTC GAGGCCGCAA AAGAGGATGT GCAAAATACA
CTGCAAGATA CCATCTTGAG TGTGGCCGAG GTTTATGTCG GGTTATTGGA GGCGCAAGAG
GTCGCCGCGC TGTCGGTCAA TAATTTAAAA GTGACCAGCA GCCAGTTAGA GGCCACCCGA
GCCCGTTTTG AGGTGGGTGA AATCACCCGT ACCGATGTGC GCCAAGGGGA AGCCCGGGTT
GCCAGTGCCG AGGCACAGGT CAAGAGCAAT CAAAATGCTG TAAGCGTGAG CGAAGCCAAA
TATCGTGAAG TGGTGGGCAT GCCTCCTCCT CAACAGATGC CTGTTCCCAG TGTTGAGGAT
GCCCTGATGC ATCGGGATTT GGATCAACTC ATCGCCCAGG CAGAGGCCCA TCGTCCCGAT
TTATTGGCCG CGCAAGAGCG CTTAAAGGTC GATCAGTTGG GGGTTAATTA TGCCCGTGCA
GGTCACTACC CAACCCTGAC TTTTTCGGCC AATGGTACCT TTACGGATGA TGCGGAGATC
TCCACCAAGA CCCAGGACAG CCGTGCCTAT ACCTTTGTGT TAACGGCAGA GGTGCCGGTT
TATGAGGGGG GTGGAACCCA GTCCACGCTG CGCCAAGCCA AGCATACACT GGCGGCCTCT
CGTGCCGATT TGGACAGCCA AGTGTTGCAG ATCCGACGTG AGGTTGAAGA GGCCCTGCTT
AACTACCGCA GTGCGCTGGC CGTGGTCACT TCGTATGAGT CCGCATTAGC GGCCTCCCAG
GACGCCCTAA ACGGTGTGGA GCAGGAGTTC CAGGTGGGTA CCCGCACCGC TCTGGATCTG
TTGGATCAGC AAAATGAAGT GTTTAGAAAT CAGACCGAAC TGGCTAAACA GCGCTTTAAT
GTGATTTTGG CCCGTTTCCG TTTGTTAAGT GCAACGGGTG AGTTGACTTT GGCAAATCTG
GGGTTGACAC AAGAGGTTGC CTCTAAATAA
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| Protein sequence | MSDSRYEFTV SSVLKPARWA FLAALVVGLP LGALQAQEQH PFAAAVMQAL QTNPDVRSSR
ASLDSAKEKP VGTTAALRPT ITFTSTATHT ASFYGTTKSK SDPRAYKLDL SQPIYNKQLF
VADEQAMPYV EAAKEDVQNT LQDTILSVAE VYVGLLEAQE VAALSVNNLK VTSSQLEATR
ARFEVGEITR TDVRQGEARV ASAEAQVKSN QNAVSVSEAK YREVVGMPPP QQMPVPSVED
ALMHRDLDQL IAQAEAHRPD LLAAQERLKV DQLGVNYARA GHYPTLTFSA NGTFTDDAEI
STKTQDSRAY TFVLTAEVPV YEGGGTQSTL RQAKHTLAAS RADLDSQVLQ IRREVEEALL
NYRSALAVVT SYESALAASQ DALNGVEQEF QVGTRTALDL LDQQNEVFRN QTELAKQRFN
VILARFRLLS ATGELTLANL GLTQEVASK
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