| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_0564 |
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| Symbol | |
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| ID | 4481398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 683758 |
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| End bp | 685275 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639721311 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_864495 |
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| Protein GI | 117923878 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCCG TGGATACCAT TCGAGAGAGC CTGGAAAAGG CCATTACCCT GCAACAGCAA
GGGCATGCAG AAGAAGCGCT GCTGCTTTAC CACGCGCTGT TGCAGCACTA TCCCAAGCAG
GCCGATCTCT ACTATCTGAC CGGCTTGGCC CACCAGGATT TGCAGCAGTG GCCGCAGGCC
TGTGAACGGT TGGAACAAGC GGTGGCGTTG GATGGGCAAC GTTCTGATTT TTTACTGGCT
TTGGGTATGG TTCTGCAAGA GTTGGAGTTG CCAGAACAGG CCAAGCAGCG TTATGCCCAG
GCGGCGTTGT TGGACCCTCA AGATTATCAA GCCTACTACC ATATTGGGGA TAGCTGTATT
GATCTGGGCC AGAACCGGCA AGCCATTGAG GCTTTTACGC AGGCCATTAA GTGCAAGCCG
GATTTGCAGG AGGCGTGGCT CAATCTGGGG CTCTGTCTCA AGGCGGCTGG AGAGCTGCCG
GGTGCCTTGC AAGCCTTTAC TACCGCTTTG CAGCTTAATC CCGACGATGC CAAGGCCAAG
GTGGATTATG CTATGGCTCT ATTGGCGATG GGGGATTATG CAAACGGGTG GCGATATTAT
ACGGCGCGTT TTCAATTTAG CCATGTTTTT AATGATATGC AGCGCATACC GGCCAATGTG
GAAGCATGGA ATGGTGAACC GTTGCAGGAT AAGACCCTGC TGGTTTTATG TGAGCAGGGG
TATGGGGATA ATCTTCAGTT TGCCCGTTAT CTGCCTATGC TGCGGGCGCG GGGTGTCAAG
AAGTTGATTG TGGAGAGCAA GGGCCATTTA ATCGAGCTGT TTCGGTATAA TGAGTTGGCC
GATGCCTATT GCAACGTCAT GGAAGTAAAA GAGCAGCAGG CCGATTATTA TGTACCCTTG
CTGGAGCTGC CCCGTTTGTT GGAGACCCGG GTAGAGAACA TACCGGCTGA TCTGCCGCTC
TATCGGGTCA GTGCGGCGTT GATGCACAAG TTGGCGGCGC AGATCCCCTC GGGTGGGTTT
AAGGTGGGTC TGGTGTGGAG CGGTAAACCG CTGCACCCGC GAGATCCGGC GCGGCGTCGC
AGTTGTCCCT TTGCTGAGCT GGCACCGCTG GCAACGGTGG CGGGGGTGGA TTTTTATAGC
CTGCAAACTG GTTTGGAGGA GGATCACATG CCAAGCAAAC TGGCGGGTGA TACGCCCTTA
ATAGACTTAA ATCCCTATCT GGATGATTTT CATCACACCG CAGCGGCGAT GCAGCAGTTG
GATTTGATTA TCACCATCGA CACCGCAGCG GCGCATTTGG CGGGTAGTTT AAAGCGGCCC
ACGTGGTTGT TGACCCCTTA TGCGGCGGAT TGGCGTTGGG GGGTGACGGG TAATAGCACG
CCGTGGTATC CGGGCATGCG TCTCTACCGT CAGCCAGCAC CGGGGGCGTG GCAACCGGTG
ATTGCCCAGG TAACGGCGCA ACTGCGTCAA TTGGTGGCGT ATAGCACGGG TTATGCGGCC
ACTGCCCCCT CCCTTTAG
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| Protein sequence | MAAVDTIRES LEKAITLQQQ GHAEEALLLY HALLQHYPKQ ADLYYLTGLA HQDLQQWPQA
CERLEQAVAL DGQRSDFLLA LGMVLQELEL PEQAKQRYAQ AALLDPQDYQ AYYHIGDSCI
DLGQNRQAIE AFTQAIKCKP DLQEAWLNLG LCLKAAGELP GALQAFTTAL QLNPDDAKAK
VDYAMALLAM GDYANGWRYY TARFQFSHVF NDMQRIPANV EAWNGEPLQD KTLLVLCEQG
YGDNLQFARY LPMLRARGVK KLIVESKGHL IELFRYNELA DAYCNVMEVK EQQADYYVPL
LELPRLLETR VENIPADLPL YRVSAALMHK LAAQIPSGGF KVGLVWSGKP LHPRDPARRR
SCPFAELAPL ATVAGVDFYS LQTGLEEDHM PSKLAGDTPL IDLNPYLDDF HHTAAAMQQL
DLIITIDTAA AHLAGSLKRP TWLLTPYAAD WRWGVTGNST PWYPGMRLYR QPAPGAWQPV
IAQVTAQLRQ LVAYSTGYAA TAPSL
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