Gene Mmc1_0293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMmc1_0293 
Symbol 
ID4483350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMagnetococcus sp. MC-1 
KingdomBacteria 
Replicon accessionNC_008576 
Strand
Start bp333465 
End bp335834 
Gene Length2370 bp 
Protein Length789 aa 
Translation table11 
GC content55% 
IMG OID639721042 
ProductTPR repeat-containing protein 
Protein accessionYP_864226 
Protein GI117923609 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTGTGC AGAACCCTTC ATCCGTCCCA GCGTTTACAC AGGCAATGCA TCATCTCCAG 
CAGGGCCAAA CGGCGCAGGC GATGGTGTTG TTTCAGGACG TCCCCGCTGG TGATCCTGGT
TTTGTAACCG CCCAGCTTAA TTTGGGCATA CACGCCCACT ATCAACAGCA GTGGCAAGAG
GCCGAGCAGT ACTACAAGGG CGTGTTGGCC TTGGCACCAC AACATCCCCA GTGTCAGCAG
CAGCTCTTTA TCCTTTATAA AACCTTGCAG CGTGAGCAAC CGGCTCAACA GCTCATGCAA
CACCTATTGG CCGCAACCCA TGGGGATCCC TTGCTGTGGC AGCAGTGGGC AGAAACCTTG
GCCCACTATG GTGAGGTTAA CGGGGCGCTA AGCTGCTGGG CACACGCTTA TCGTTTGCAG
CCCGACAATC CACAGCCCCT ACGCGCCATG GCGCAACGGT TGGAGCAGCA AGGCCGCATC
CAGGAGGCCA CCGAGCAACT GCAACAGCTC GCCCAAATGT TGCCCGAAGA TCTGGATCTT
TTGCTGCATC TTGTGGGGCT GCTCAAACAG ATTGGCAAGC ACACCGCCGC CGAAGCCTAC
TTACGGCAGC GTTTGGTTGA ACATCCCCAA TCCCAACCGT TGCGCTTTGC CCTGGCCAAT
CTGTTGATGG ATCAGGGTAA CTTGGCCGAA GCCGAGACGC TGTTTCGTCA AAACCTGCCC
GATCACCTGC TTAGCCAGCT TAATCTGGGG GTTATCTATG GCCGTCAGGG GCGTTATACC
GAGGCTCTGC ACCTTTTTCG TCATGCCAAT GCGGTCACCC CCAACCATCT TTTTACCGGT
TATAACCTTG CGGTGCTTTG TCTACAGATC GGGCAATTGG ATGAGGCGCA AGCCCTGCTT
GAGCAGGCCA TCGCGCACCA TCCACAGCAG GTGGCTTTGC GTAATACCCT AGGGCAAGTC
TATGCACGGC AACTAAAATT CACCCAGGCA ATTCAATGTT TTCATGCAGC CTTACAGCAA
CAACCCCAAT GTGAAAGCTA TCTACAGTTA GGTACCCTCT ACCGCAACAG CGCTCAGCTT
GCAGAAGCCA AACAGTGTAA TGATCAAGCG GTGTTGTTGG ATCCCGAAAA TTTAGAGGCA
CGCACCCATC AACTTTTTTT AGCCCACTAT CTGCCAGATG CCCATCAAGC GCAGATGTTG
GCGCAAGCCC GCGCCTTTGG TCAATTGGTT GCGGGGCGGG CCAAGCCCTT TGCGCACGCG
GTACCCGCCA GCCCCCCAAA ACCCCTGCGG GTGGGGTTGG TTTCGCCCGA TCTGCGTGGT
CACCCGGTGG GTTATTTTTT AGAGTCTATC GTGCATGCCA TGGATGGTCA GCGCATTATG
TTGTGCGCCT ATAACAGTGG TCCACCGGGG GATGCACTGA CCCAACGTCT ACAAAGTCGC
ATGGCCCATT GGCGGGATAT TGAGTTTATG AGTGATGCCC AAGTGGCTCA GCTCATCCGG
CAGGATGGCA TTGATATTTT GGTGGATTTG GCGGGCCACA CCGCTAAAAA TCGGTTGGCC
CTGTTTGCTT GGAAACCGGC CCCCATTCAG GTCACATGGC TGGGCTATTC GGCCACCACA
GGGGTGAGCC AGATAGACTA TATTATGGGT GATCCTTACA CCTTGCGTGC CCATGAGGCC
GCCCACTACG TGGAAAAAAT GTGGCAGCTA CCCCATAGTC ATCTCTGTTT TACCCCGCCC
GATCTTGAGC TAGAGGTCAA TGCTCTACCA GCCTTGCAGC AGGGCTTTGT GACCTTTGGC
TGTTTTAACA AGCTTACCAA AATCAACGAT GAGGTACTAA GCTGCTGGGC GGAGATTCTT
CAGCGATTAC CGAGCAGCCG TCTTTACCTT AAACAGGGGA TCTATGCCAA TGCTGAGGTT
GCCCAGCAGC TCTACGCCCG TTTTCAGGCC CTAGGCATTG GCGCAGAGCG GTTGATTTTG
GAGGGGGGAT CGGATCGAGA GGGGTATTTT CGCTGTTATC ATCGGGTGGA TATGGCGTTG
GACCCCTTTC CCTTTCCGGG TGGTACCACC AGTGTCGAAG GGTTATGGAT GGGGGTACCC
CTGGTAACCT TGCAGGGCAA CCGCTTTATG GCTCACCAAG GGGAGAGTAT TCTTCAGCAT
GCCGGGTTGG CCCACTGGAT CGCCCAAGAT CGCCACGCCT ATGTGGAGAA GGTGATCGCC
TTTGCCAAGG ATCTGCCCGC CTTGGCCCAA CTGCGACACG GTTTGCGCCA GCAGGTGCTG
GCTTCCCCCC TGTTTGATGC GCCCTTAATG GCCACAGATC TGATGCAGGC TTGGGAGCAG
ATGTGGCAGA TCTACCAAAA TGGCCGCTAA
 
Protein sequence
MTVQNPSSVP AFTQAMHHLQ QGQTAQAMVL FQDVPAGDPG FVTAQLNLGI HAHYQQQWQE 
AEQYYKGVLA LAPQHPQCQQ QLFILYKTLQ REQPAQQLMQ HLLAATHGDP LLWQQWAETL
AHYGEVNGAL SCWAHAYRLQ PDNPQPLRAM AQRLEQQGRI QEATEQLQQL AQMLPEDLDL
LLHLVGLLKQ IGKHTAAEAY LRQRLVEHPQ SQPLRFALAN LLMDQGNLAE AETLFRQNLP
DHLLSQLNLG VIYGRQGRYT EALHLFRHAN AVTPNHLFTG YNLAVLCLQI GQLDEAQALL
EQAIAHHPQQ VALRNTLGQV YARQLKFTQA IQCFHAALQQ QPQCESYLQL GTLYRNSAQL
AEAKQCNDQA VLLDPENLEA RTHQLFLAHY LPDAHQAQML AQARAFGQLV AGRAKPFAHA
VPASPPKPLR VGLVSPDLRG HPVGYFLESI VHAMDGQRIM LCAYNSGPPG DALTQRLQSR
MAHWRDIEFM SDAQVAQLIR QDGIDILVDL AGHTAKNRLA LFAWKPAPIQ VTWLGYSATT
GVSQIDYIMG DPYTLRAHEA AHYVEKMWQL PHSHLCFTPP DLELEVNALP ALQQGFVTFG
CFNKLTKIND EVLSCWAEIL QRLPSSRLYL KQGIYANAEV AQQLYARFQA LGIGAERLIL
EGGSDREGYF RCYHRVDMAL DPFPFPGGTT SVEGLWMGVP LVTLQGNRFM AHQGESILQH
AGLAHWIAQD RHAYVEKVIA FAKDLPALAQ LRHGLRQQVL ASPLFDAPLM ATDLMQAWEQ
MWQIYQNGR