Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmc1_0022 |
Symbol | |
ID | 4480708 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Magnetococcus sp. MC-1 |
Kingdom | Bacteria |
Replicon accession | NC_008576 |
Strand | - |
Start bp | 23815 |
End bp | 24675 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639720768 |
Product | shikimate dehydrogenase |
Protein accession | YP_863957 |
Protein GI | 117923340 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.301777 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCTCTA AAGCGCTTAA TATTAATGGT GAAACAGGCC TACTTGCGGT CATTGGGGAC CCTGTAAGTC ACTCCCTTTC ACCCAAGATG CACAATCTGG CCCTGCGTCA TTGTCAACTC AATTATTGTT ATGTGGCGCT ACCGGTCAAA CCACACAATT TAGTGCGAGC GGTGCAGGGT TTTGCGGCTA TGGGCATGCG CGGTTTTAAT GCCACCATTC CCCACAAAGA GAACCTGCTC CCGCTGATGC ACACCCTTAG TGAAGAGGCC AGCCATATTG GTGCCGTTAA CACCGTGGTG ATTGATGACG ATGGCAAAAT GACCGGTCAT AATACCGATG CCTATGGGTT TATTACCGGA CTTAAAGAGG CTTGGCGTAG TGACCTGTCG GGGTTAACCG CCATTATGTT GGGTTCTGGT GGCGCGGCAC GGGCCATTTT ATATGGACTT ATTCAAGCCA AAGCCGCACG GGTTATCATC GCCAACCGTA CCATTGAGCG TGCGCAGGCT CTGATTGAGG CCATGCAACC CTATGCACCC AACACACAGC TTATGGTTGC ACCGACCCAA GCCGATCAAC TGCCGCTGGA GTCGTGTGAC CTGCTTATTA ACACCACCAG TATGGGGTTA AAGGGAGAGA CCATTCCCTA TATTGACTTG GCACGACTTC CACACCACGC CTTCGTTAGT GATATTGTCT ATGGTGCCCA TCCTACCCCA CTGCTACGGG CCACCGCACA ACATCAATTA GGCGGGCAGG ATGGTCTGCC CATGTTGATC CATCAAGGGG CCAAAGCCTT TGAATTATGG ACAGGGCACA GCATGCCCGT TGAGCTGGTT GAGCATACAC TACGTCAGTA A
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Protein sequence | MLSKALNING ETGLLAVIGD PVSHSLSPKM HNLALRHCQL NYCYVALPVK PHNLVRAVQG FAAMGMRGFN ATIPHKENLL PLMHTLSEEA SHIGAVNTVV IDDDGKMTGH NTDAYGFITG LKEAWRSDLS GLTAIMLGSG GAARAILYGL IQAKAARVII ANRTIERAQA LIEAMQPYAP NTQLMVAPTQ ADQLPLESCD LLINTTSMGL KGETIPYIDL ARLPHHAFVS DIVYGAHPTP LLRATAQHQL GGQDGLPMLI HQGAKAFELW TGHSMPVELV EHTLRQ
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