| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_1287 |
|---|
| Symbol | |
|---|
| ID | 5737508 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | - |
|---|
| Start bp | 1195049 |
|---|
| End bp | 1196047 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 641283782 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001549332 |
|---|
| Protein GI | 159905670 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1808] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR00271] uncharacterized hydrophobic domain
[TIGR00341] conserved hypothetical protein TIGR00341 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACGTGA GACTCATAGA ATGCTATGTT CCAAAAAAAA TATATACTGG ATACGAAGAA
TCGCTTGGAG ATAATCTTGA AAATATCATC TGGCATAGCG TTTGCGAAGA ATCAATTTAT
ACAATAATCA GGTTACTTGC CGAGACAGAA CACGTTGAAA AAGTAATAGA TATACTTTCC
TCAAAATACG GTGGTTCGAA TTTCAGAATT ATTGTAACTG AGCCAACTGC AACAGTTCCA
GAAATTAAAA AAGAAGAAAA AGTGGAAGTT GAAGATAAAA CCCCAAAAAG AGTTTCGCGA
CATGAAATAA TTGGAAAAAT AGGGGATGTA TCCAACCTTT CAAAGGAATA TTACTCATTA
TTATTTTTAG CAGCAGTTGT TGCTTCAATT GGAATATGGT TAGATGATGT TGCATTGATA
ATCGGTTCAA TGATAATCGC ACCTTTTTTA AGCCCGATGA TCTCATTTAC ATTTTCAGTT
GCAGTTATGG ATTTAGCTTT TGCAAAAAAA TCATTGAAAA ACCTTCTTTT AGGAATTTTA
ACAGTATTCC TATTCTCATT TGTTATAGGT ACTTTCCTGC ACGTAAGCCC GGAAAGCCCG
CAAATCGCAT CCAGAATGAA TCTAGGATTG CAAAATATAA TAATTGCACT TTCAGCAGGG
TTTGTTGGTA CCATTTCAAT GCTAATCCCT GAAATTTCAT CAACAGTTGT CGGAGTTATG
ATTGCAGTTG CCCTGATGCC ACCACTAGTT GCATTTGGTT TAATGCTTGG TTCGGGATAT
TATGTAGAAT CAATCCCAAT TTTAATACTA TTTATTGTAA ACATAATCTC TGTTAATTTT
GCATCTGCAT CTTTATTTTA TTTATATGGA ATAACCCCTT ACAAATGGTG GGAAATTGAA
AAAGCAAGAA AATTATCAAT GTATAGCATT TTATTTTGGT TTTTAAACCT CATAATTCTT
GCATGCATTA TTATAATATT TGGAAACGGA TTTTTGTAA
|
|---|
| Protein sequence | MNVRLIECYV PKKIYTGYEE SLGDNLENII WHSVCEESIY TIIRLLAETE HVEKVIDILS
SKYGGSNFRI IVTEPTATVP EIKKEEKVEV EDKTPKRVSR HEIIGKIGDV SNLSKEYYSL
LFLAAVVASI GIWLDDVALI IGSMIIAPFL SPMISFTFSV AVMDLAFAKK SLKNLLLGIL
TVFLFSFVIG TFLHVSPESP QIASRMNLGL QNIIIALSAG FVGTISMLIP EISSTVVGVM
IAVALMPPLV AFGLMLGSGY YVESIPILIL FIVNIISVNF ASASLFYLYG ITPYKWWEIE
KARKLSMYSI LFWFLNLIIL ACIIIIFGNG FL
|
|---|
| |