Gene MmarC6_0471 details

Gene Information

• Locus tag: MmarC6_0471
• ID: 5738445
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C6
• Kingdom: Archaea
• Replicon accession: NC_009975
• Strand: -
• Start bp: 428416
• End bp: 428979
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 641282933
• Product: DNA-directed RNA polymerase subunit E'
• Protein accession: YP_001548521
• Protein GI: 159904859
• COG category: [K] Transcription
• COG ID: [COG1095] DNA-directed RNA polymerase, subunit E'
• TIGRFAM ID: [TIGR00448] DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form

Plasmid Coverage information

• Num covering plasmid clones: 43
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTATAAAA TTTTAAAAAT TTCTGATACC GTGAGAATTC CTCCTAAAAT GTTTGGAAAC 
CCGTTAAGCG AAAACGTAAA AAGGGTTTTA ATGGAAAAAT ACGAAGGAAT TCTTGATAAG 
GACATCGGAT TTATCCTTTC AATCGTTGAT GTGGATAACG TAAGCGATGG AAGCATAATT 
TATGGAGATG GTGCAGCATA CCACGAAACA GAATTCAATG TACTCACATA CGTTCCAGAA 
CTTCAGGAAG TAGTTGATGG GGAAATCGTT GATGTTGTTG AATTCGGTGC TTTTGTAAGA 
CTTGGCCCCC TCGATGGTTT GATCCACATT TCACAAATCA TGGATGATTT CGTAAGCTTT 
GACCCAAAAA GAGAAGCAAT TATTGGAAAA GAAACAGGCA AAGTTTTAGA AAAAGGCGAT 
AAAGTAAGAG CTAGAATTGT TGCGGTAAGT TTGAGAGAAG AGAAGAAAAG AGGCAGCAAA 
ATAGCTTTAA CAATGAGACA GAACGGTCTT GGAAGACTTG AATGGCTCGA AGAGGAAAAT 
GAAACAGCAA GCGAAGAAAA TTAA 

 

Protein sequence

MYKILKISDT VRIPPKMFGN PLSENVKRVL MEKYEGILDK DIGFILSIVD VDNVSDGSII 
YGDGAAYHET EFNVLTYVPE LQEVVDGEIV DVVEFGAFVR LGPLDGLIHI SQIMDDFVSF 
DPKREAIIGK ETGKVLEKGD KVRARIVAVS LREEKKRGSK IALTMRQNGL GRLEWLEEEN 
ETASEEN