| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0356 |
|---|
| Symbol | |
|---|
| ID | 5737993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C6 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009975 |
|---|
| Strand | + |
|---|
| Start bp | 318777 |
|---|
| End bp | 319847 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 641282820 |
|---|
| Product | DNA-(apurinic or apyrimidinic site) lyase |
|---|
| Protein accession | YP_001548409 |
|---|
| Protein GI | 159904747 |
|---|
| COG category | [L] Replication, recombination and repair
[S] Function unknown |
|---|
| COG ID | [COG0177] Predicted EndoIII-related endonuclease
[COG1833] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01083] endonuclease III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0334689 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATA CTGATATCCC ATTTATTAAA TTTTTGAATA TTTTAGGCGA AAATTTAAAA
AAAGATGCCG TAGTTGACAA AATATCTAAA AATTCAAATG AAAATGAACG GGCTTTTAAA
ATACTAGTTT CTACCGTGAT AAGTGCGCGA ACCAAAGATG AAACTACCGC TAAAGTATCA
AAAGAGCTAT TCAAAAAAGT AAAATCTCCA AAAGATCTTT CAGAAATTTC TGTAGAAGAA
CTCGAAAAGT TAGTTCACCC AGCAGGATTT TACAAAACTA AGGCCAAAAA TCTAAAAAAA
TTAGGCGAAA TTTTACTTGA AAAATATGAT TCAAAAATTC CAAATTCAAT TGAAGAACTT
ATAAAACTTC CAGGGGTTGG ACGAAAAACT GCAAACTTAG TAATGACTCT TGCATTTGAT
GAATACGCAA TCTGTGTTGA CACACACGTT CACAGAATTA CAAATCGTTG GAATTATGTT
GATACTGAGT TTCCTGAAAA CACAGAAATG GAACTTCGAA AAAAACTTCC GAAAGATTAC
TGGAAAAGAA TTAACAATCT ACTTGTTGTA TTTGGACAGG AAATATGCAG CCCGATTCCA
AAATGCGATA AGTGTTTTTC TGAAATTCGA GAAATCTGCC CCCACTACAA TTCATTAAAA
GAACTCGAAA AAATTTATAA AGATTTCAAC TTTAAAAAGA CTCCAAAAAC CAAAATTCCA
AAATATAAAG GCACTTACGT CTTAAGAATA AAGATGAACG CTCCAAGAAC CATTCTCGTT
GGAAAAAGAG AGATTAAATT TAAAAAAGGA GATTACTTCT ATATCGGTTC TGCAATGGGG
GACAGCATGA ACCTATACAA CAGAATAAGC AGGCATCTAT CTGAAAATAA GAAAAAAAGA
TGGCATATTG ATTATTTACT GGAATTTTCA AATGTAAAAG AAGTAAACGT AACACTCGGA
CGATTCGAAT GTGATGTTTC GAATCGGTTT AATTTGGTTT TCGATTCTGT AGAATCTTTC
GGATGTTCGG ACTGCAAGTG TAAAAGTCAT CTGTATTACA TTAAACCATG A
|
|---|
| Protein sequence | MNNTDIPFIK FLNILGENLK KDAVVDKISK NSNENERAFK ILVSTVISAR TKDETTAKVS
KELFKKVKSP KDLSEISVEE LEKLVHPAGF YKTKAKNLKK LGEILLEKYD SKIPNSIEEL
IKLPGVGRKT ANLVMTLAFD EYAICVDTHV HRITNRWNYV DTEFPENTEM ELRKKLPKDY
WKRINNLLVV FGQEICSPIP KCDKCFSEIR EICPHYNSLK ELEKIYKDFN FKKTPKTKIP
KYKGTYVLRI KMNAPRTILV GKREIKFKKG DYFYIGSAMG DSMNLYNRIS RHLSENKKKR
WHIDYLLEFS NVKEVNVTLG RFECDVSNRF NLVFDSVESF GCSDCKCKSH LYYIKP
|
|---|
| |