| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC6_0040 |
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| Symbol | |
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| ID | 5737999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanococcus maripaludis C6 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009975 |
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| Strand | + |
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| Start bp | 35335 |
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| End bp | 38433 |
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| Gene Length | 3099 bp |
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| Protein Length | 1032 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641282508 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001548098 |
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| Protein GI | 159904436 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.126055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAATT TATGTGAAGA TACGATTGAA CAGGGGACTC TTGAGCTTTT AGAAAGTATT
GGATACGAAA TAATTTCTGG TCCTGAAATT GCGCCTGATG GCACTTCTCC AGAACGTAAA
GATTATTCTG AAGTTGTACT TGTTTCTCGC CTTAGAAACG CAATTTCAAG AATAAATCCA
AATGTTCCAG AGGTTGCGAG GGAAGATGCA CTTCGAAAAG TCTTGAGGCT TGAAAATCCA
AATTTACTCA TGAATAACGA GAAGTTTCAC GAATTTATAT TTAAGGGAAT TGATGTAGAA
TATCCAATTG ATGGAAGAGT TAAGGGAGAT AAGGTTTACT TACTCGATAA AGACCCGTTA
AAAAACGAAT TTGTTGCAGT AAACCAGTTT ACAATCATTC AAAATAATAA AAACAGGCGG
CCAGATATTG TCATATTTGT AAACGGGCTT CCGCTTTCGG TAATCGAACT TAAAAATCCT
ACAAAAGAAG ATGCTACAAT TTGGAGTGCT TATAACCAGA TTCAAACGTA TAAATCGGAA
ATTTCAGAAC TTTTTAAGTA TAACGAGCTT ATCCTAATTT CTGATGGTAC GGAATCGAGA
ATAGGTACGC TTTCTTCAAA TAAAGAGTGG TTTTTACCGT GGAAATCAAT TGATGGAACT
TCTGAAATTA ATAATGGAGT AAGCCAACTA AAGATTTCAA TTCTTGGAAT GTTTGATAAA
ACGCGGTTTA TTGACATAAT AAAGAATTTT ATTGTTTTTA AAAAGGATGG AAAAGACATT
ATAAAAGTTA TTGCTGGATA CCACCAATAT TTTGCGGCAA ATCGTGCAAT TGAAAAAACT
ATTGAAGCAA TTTCTGGAAA TCGCCGGTGT GGTGTTGTAT GGCATACGCA AGGGTCTGGA
AAAAGTCTTA CAATGGCTTT TTATGCTGGA AAACTTGCAA TTACTCCAGA ACTTAGAAAT
CCTACAATCG TAGTTGTAAC TGATAGGAAT GACCTTGATG ACCAGCTCTT TGGAACGTTT
GCATCATGTA TTGATGTATT AAAACAGACT CCTGTTCAGG CAAAAAATGC AGAAGACTTA
AAGGAACAGT TAAAGGTTGT ATCGGGTGGA GTAATCTTTA CAACGATGCA GAAGTTTTCT
GTTGATGAAC TTAATGCAAA ATATCCAATG CTTTCTGATC GAGAAAACAT AATCGTGATG
GCTGATGAAG CACACAGGAG CCAGTACGGA CTTAAAGCGA GATCTGTTGA GAAAAACGGT
GAAGTTGGTA TAACTTATGG TTTTGCTAAA TATTTGCGTG ATGCGCTACC AAATGCTTCA
TTTATTGGAT TTACAGGAAC TCCGATAGAC TTTGAAGATA AAAGCACCCG TTCGATATTT
GGTGAATATA TCGATATTTA CGATGTAAGA CGGGCTGTTG CTGATGGTAG AACTGTAAAA
ATCTACTATG AAAGCCGTGT TGCAAAAATC GGAATTGAAA ACGACGTTCT TGCTAAACTT
GACGCAGAAT TTGAAGAAGT TACAGAATTT GAAGAAAATT ATAAAAAAGA GAAATTAAAG
GGCAAATGGG CACAGCTTGA AGCGATTGTT GGAAGCAATG ACAGGATTTC AAAAGTTGCA
CAGGATATTG TCAATCACTT TGAAAAACGG GAAGAAACGC TTAGTGGAAA AGCAATTGTT
GTATGCATGA GCAGGAGAAT TTGTGTTGAC CTTTATGACG AAATTATTCG TTTGCGGCCT
GAATGGCATA ATGACGATGA CAAACTCGGT GTTTTAAAAG TTATAATGAC AGGTTCTGCG
GCTGATGGCA CGGAATGGCA AAAACATATC CGTTCAAAAG GAAAACGAAA AGAGCTTGCT
GAACACTTTA AAAATCCTGA AAGCGAATTT AAAATTGCGA TTGTTCGTGA TATGTGGCTT
ACTGGCTTTG ATGTTCCGTG TTTGCATACA CTTTACATCG ATAAGCCTAT GAAAGGGCAC
GGATTAATGC AGGCGATTGC AAGGGTAAAC AGGGTATTTA GAGATAAGCC TGGAGGACTT
GTTGTTGACT ACATCGGAAT TGCACAGGAT TTAAAGTATG CGCTTATGAA TTACACTTCA
TCTGGCGGTA CTGGGAAACC AACGTATGAT ATAGAAGATG CAGTAAACCT CATGAAATCA
AAATACGAAG CTATGAAAGA TTTCTTTTAT GGCCATGACT ACTCAAAATT CTTTAATGGC
ACAAATATTG AAAAAATGGA TGTAATTCCA GAAACTTTAG AATTTATCCT CAATCAGCCT
GACGGGAAAA AGCGGTTTGT TAAACTTGCG CTTGAACTTA TAAAGTCATA CGCTCTATCT
CTGCCGCATG AAGAAGCCGT AAAAATCCGT GAGGAAGTCG CGTTCTTTAC AGGGGTTAAA
GCGGCACTGT ATAAAAATAC GGAAATTTCA GGAAAACCAG AAGATGAACT AAACAGCGCG
ATAAAACAGA TTGTATCGGG TGCAGTTCGT ACTGATGGAA TAATCGATGT ATTTGGTGAA
GCAGGACTTG AAAAACCCGA TATTTCGATT CTGTCTGAAC AGTTCCTCGA AGATGTAAAA
AACATGAAAT ATAAAAATTT AGCACTTGAA ACGCTTAAAA AAATATTAAA TGACGAGATA
AGGGCTAAAT TTAAAAACAA TCTTTTGCAG GAAAAGAAAT TTTCAGAGAT GATTGAAAAC
GCGATTAAAA GATACCACAA TAAAGCGATA GATTCGGCGG CAGTTATTCA AGAACTCATA
GCAATTGCAA AGGAGATTGA AAACGCTAAA AGAAGAGGGG AAGAATTACA TTTAACTGAA
GAAGAGCTCG CATTTTACGA TGCGTTATCA GACAACGATT CAGCAAAGGA AATTTTAGGA
ACAGAGATTT TAACAGAAAT TGCACGAGAA CTTACCGAAA CATTACGGAA TAGCGTATCT
ATTGACTGGG AAGTTAGGGA AACTGTAAGG GCAACTTTAA GAGTTAAAAT TAAAAGGTTA
CTTCGAAAAT ATGGGTATCC TCCAGACAAA CAGCAGATTG CAGCGGACCT TGTTTTAAAA
CAAGCTGAAA CAATTTCTAA AGAATGGATT AAGGCGTAA
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| Protein sequence | MSNLCEDTIE QGTLELLESI GYEIISGPEI APDGTSPERK DYSEVVLVSR LRNAISRINP
NVPEVAREDA LRKVLRLENP NLLMNNEKFH EFIFKGIDVE YPIDGRVKGD KVYLLDKDPL
KNEFVAVNQF TIIQNNKNRR PDIVIFVNGL PLSVIELKNP TKEDATIWSA YNQIQTYKSE
ISELFKYNEL ILISDGTESR IGTLSSNKEW FLPWKSIDGT SEINNGVSQL KISILGMFDK
TRFIDIIKNF IVFKKDGKDI IKVIAGYHQY FAANRAIEKT IEAISGNRRC GVVWHTQGSG
KSLTMAFYAG KLAITPELRN PTIVVVTDRN DLDDQLFGTF ASCIDVLKQT PVQAKNAEDL
KEQLKVVSGG VIFTTMQKFS VDELNAKYPM LSDRENIIVM ADEAHRSQYG LKARSVEKNG
EVGITYGFAK YLRDALPNAS FIGFTGTPID FEDKSTRSIF GEYIDIYDVR RAVADGRTVK
IYYESRVAKI GIENDVLAKL DAEFEEVTEF EENYKKEKLK GKWAQLEAIV GSNDRISKVA
QDIVNHFEKR EETLSGKAIV VCMSRRICVD LYDEIIRLRP EWHNDDDKLG VLKVIMTGSA
ADGTEWQKHI RSKGKRKELA EHFKNPESEF KIAIVRDMWL TGFDVPCLHT LYIDKPMKGH
GLMQAIARVN RVFRDKPGGL VVDYIGIAQD LKYALMNYTS SGGTGKPTYD IEDAVNLMKS
KYEAMKDFFY GHDYSKFFNG TNIEKMDVIP ETLEFILNQP DGKKRFVKLA LELIKSYALS
LPHEEAVKIR EEVAFFTGVK AALYKNTEIS GKPEDELNSA IKQIVSGAVR TDGIIDVFGE
AGLEKPDISI LSEQFLEDVK NMKYKNLALE TLKKILNDEI RAKFKNNLLQ EKKFSEMIEN
AIKRYHNKAI DSAAVIQELI AIAKEIENAK RRGEELHLTE EELAFYDALS DNDSAKEILG
TEILTEIARE LTETLRNSVS IDWEVRETVR ATLRVKIKRL LRKYGYPPDK QQIAADLVLK
QAETISKEWI KA
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