Gene MmarC5_1622 details

Gene Information

• Locus tag: MmarC5_1622
• ID: 4928355
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanococcus maripaludis C5
• Kingdom: Archaea
• Replicon accession: NC_009135
• Strand: +
• Start bp: 1562218
• End bp: 1562697
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 640167128
• Product: putative RNA-binding protein
• Protein accession: YP_001098133
• Protein GI: 134046648
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG2016] Predicted RNA-binding protein (contains PUA domain)
• TIGRFAM ID: [TIGR00451] uncharacterized domain 2

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAATAA AAAGAAGATA CATGCTAAAA AAGAAAGAAT TAAAGGAATT AAAGGATGAA 
CTTGGAAATA TTTTTGACGT TGAAAAAATA ATTCCAAAAA AAGCAGTCGT TGAAAAAGCG 
GTAACCGAAG AAGGCGAAAT AATCCTTTTA GACGGGACCC CTCTTGCAAT GGTAAACAAT 
GGAAGGATAT TTCCAACATT GAAGTTCCTT TTAAATATGG ATATCGAAAA CAATAAGGTT 
ACTGTAGACA TGGGTGCCGT AAAATTCATC GCAAACGGTG CAGACGTCAT GGCCCCGGGA 
ATCGTCGAAG CTGACGAAAA TATCCAAGAA GGAGACATTG TATTCGTAGT TGACGTAACT 
CACAAAAAGC CTTTATCCGT TGGAGAAGCT TTGATGGGTG GAAAAACAAT GGTTGAAGAA 
AAAAAAGGAA AAGCAATTAA AACCATCCAT TTTATCGGCG ATGAAATCTG GAAAATGTAA 

 

Protein sequence

MEIKRRYMLK KKELKELKDE LGNIFDVEKI IPKKAVVEKA VTEEGEIILL DGTPLAMVNN 
GRIFPTLKFL LNMDIENNKV TVDMGAVKFI ANGADVMAPG IVEADENIQE GDIVFVVDVT 
HKKPLSVGEA LMGGKTMVEE KKGKAIKTIH FIGDEIWKM