| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1536 |
|---|
| Symbol | |
|---|
| ID | 4928914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | + |
|---|
| Start bp | 1477183 |
|---|
| End bp | 1479492 |
|---|
| Gene Length | 2310 bp |
|---|
| Protein Length | 769 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640167032 |
|---|
| Product | (NiFe) hydrogenase maturation protein HypF |
|---|
| Protein accession | YP_001098047 |
|---|
| Protein GI | 134046562 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.18165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTACAA AACGAATAGA TGTCAAAGGC ATCGTTCAGG GCGTTGGTTT TAGGCCATTT
GTATACAGAA TTGCTAAAAA AAATGACCTG AAAGGTTATG TCAAAAACAT GGGAAATTAC
GTTGAAATAG TTGTTTTTGG GGATTTGAAA AATATTGATG CTTTTTTATC AGATTTGAGA
CTCGAAAAAC CGCCACTATC AAAAATTGAT AAACTTTCCA TTGAAAATAT AGATGAAAAT
TTAAACGAAA TTTACAGCGA TTTTACAATA AAATTAAGTG AAAACTCCGA AATTGAGGAA
GAAGGAACGA CTCCTCCAGA TATTTCGATA TGTGGTGAAT GTTTAAAAGA AATAATGGAT
AAAAAGGACA GAAGATCAAA TTACGCGTTC ACTGCATGCA CAAACTGTGG TCCAAGATTT
ACAGTCATTG AAAAACTGCC GTATGATAGA GAAAACACGT CAATGAAAGA CTTTCCATTG
TGTGAAAACT GTATTGAAGA ATATAAAAAT CCGGAAAATA GAAGGTTTCA CGCTCAGGCC
ACTTGCTGTG ATATTTGCGG GCCAGAACTA TTCATAACTG ACAATTCTGG AAAAATAATA
AGTAAAGATA TTAAAGATGC TGTTAAATTC CTTGAAAATG GAAAAATTGT TGCAATTAAG
GGAATTGGTG GAACGCACCT TGTTTGTTCG ATTAATTCTG ATAAATCAGT TTTAGAACTT
CGAAAAAGGC TTAACAGGCC AACTCAGGCG TTTGCGATTA TGAGTCGGGA AGAATATCTT
GATTTATTTT CAAAAATAGA TGAAAATGAA TTAAATGCAA TAATCTCTCC AAAAAAACCA
ATTGTTGCTT TGAAAAAAAA TGAATTTTAC GAAAAATATT TTTCAGAGCA TGTTTCAAAC
GTAAATACAA TTGGAGTAAT GCTCCCATAT TCTGGACTTC ACTACCTTCT TTTTGAAAAT
ACTGACCAGA TTGCATACAT AATGACCTCT GCAAACCTGC CTGGGCTTCC AATGTCGATA
GATAATAAAG AGATTTTGAA AAAATTAGAA AATATTGCAG ACTATTTTTT ACTCCACAAT
CGAAAAATTG TAAATCGATG TGATGACAGC GTTTTAAAAG AAATAAATGG AAAAATGCAG
TTTTTAAGGC GTTCGAGAGG TTTTGCTCCA GAACCTGTTG AAGTAAATTA TGAAAAAATT
AAAAATAACT CGAAAAACAT TCTTGCGCTT GGCCCGGAAT TAAACTCTGT TGCATGTTTG
ATTAAAAATA ATAAGTTTTA TTTAACCCAA TATATAGGAA ATACAGGAAA ATACGAAACA
TTTAATTATT TAAAGGAAGC TACCGAAAAT TTAATAAACA TCACGAATAC AAACAAGATC
GATGCAATAG TTTGCGATTT GCACCCTTCT TTTAATTCAA CGATTTTTGC AAAGGAAATG
GGAGAAAAAT ATGGAATTCC TGTAACTCAA GTACAACACC ATGAAAGCCA TTGCTATTCA
TTAATGGGAG ATTCAGATAT TTTTGAAAAT AACATCACAA TTGCAATTGA CGGCCTTGGA
TATGGAAATG ACGGAAATAT CTGGGGTGGA GAAGTATTTT TGTTTAAAGA TGGAAAAATT
GAAAGAATCG GACATCTTGA AGAACAGATT CAGCCAGGAG CAGATCTTGC TTCAAAATAT
CCGTTAAGAA TGCTTGCGTC AATACTAAAT AAAGCTAATT TAAATGTTTC TGAAATTATT
AACGGATATG ACTACTTTTC AGAAAAGGAA CTGAAATTAA TATTGTTCCA ACTTGAAAAA
AATATTAATG TTTCAAAAAC TACATCAACT GGAAGAATTC TTGACTCGAT TTCTGCACTT
GTTTCTCTTT GTTTTGAAAG AACATACGAT GGAGAACCAT CAATAAGACT TGAAGCGCTT
GCAAATGAAT ATGCTGGAAA AATATCAGAA ATTGAAAAAT TGGTAGAAGA TTCTATTAAA
ATTGAAAATA ATGTATTAAA TACTACATAT TTGGTTGTAA AAGCAATAGA AATGCTAAAT
AACAATGAAA AAATTGAAAA AATAGCATAT TTCATTCATA TTGCACTTGC AAACGGTTTA
TCAAAAATAG CAATTGAAAC TGCAAAAAAA CATAATATTG AGTACATTGG AATAACAGGC
GGAGTATCTT ACAACAAGAT AATCTCTGAA AGAATCGTTG AAAACATTAA AAAAGAATCG
TTAAAACCAT TAATTCATGA AAAAATTCCA AATGGAGACG GCGGAATTTC TTTCGGCCAA
GCTATTGGTT ATCTTTTAAA TTCTAATTAA
|
|---|
| Protein sequence | MITKRIDVKG IVQGVGFRPF VYRIAKKNDL KGYVKNMGNY VEIVVFGDLK NIDAFLSDLR
LEKPPLSKID KLSIENIDEN LNEIYSDFTI KLSENSEIEE EGTTPPDISI CGECLKEIMD
KKDRRSNYAF TACTNCGPRF TVIEKLPYDR ENTSMKDFPL CENCIEEYKN PENRRFHAQA
TCCDICGPEL FITDNSGKII SKDIKDAVKF LENGKIVAIK GIGGTHLVCS INSDKSVLEL
RKRLNRPTQA FAIMSREEYL DLFSKIDENE LNAIISPKKP IVALKKNEFY EKYFSEHVSN
VNTIGVMLPY SGLHYLLFEN TDQIAYIMTS ANLPGLPMSI DNKEILKKLE NIADYFLLHN
RKIVNRCDDS VLKEINGKMQ FLRRSRGFAP EPVEVNYEKI KNNSKNILAL GPELNSVACL
IKNNKFYLTQ YIGNTGKYET FNYLKEATEN LINITNTNKI DAIVCDLHPS FNSTIFAKEM
GEKYGIPVTQ VQHHESHCYS LMGDSDIFEN NITIAIDGLG YGNDGNIWGG EVFLFKDGKI
ERIGHLEEQI QPGADLASKY PLRMLASILN KANLNVSEII NGYDYFSEKE LKLILFQLEK
NINVSKTTST GRILDSISAL VSLCFERTYD GEPSIRLEAL ANEYAGKISE IEKLVEDSIK
IENNVLNTTY LVVKAIEMLN NNEKIEKIAY FIHIALANGL SKIAIETAKK HNIEYIGITG
GVSYNKIISE RIVENIKKES LKPLIHEKIP NGDGGISFGQ AIGYLLNSN
|
|---|
| |