| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MmarC5_1280 |
|---|
| Symbol | |
|---|
| ID | 4929266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanococcus maripaludis C5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009135 |
|---|
| Strand | - |
|---|
| Start bp | 1228855 |
|---|
| End bp | 1230978 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640166773 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001097792 |
|---|
| Protein GI | 134046307 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1204] Superfamily II helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTCT TTGAAGTTTT AAAAGATTTT GGAATTACAG AATTAAGACC GCCACAAAAG
AAAGTTTTAG ATAACGGACT TTTAGACAAA ACTAAAAATT TCCTCGTATG TATTCCAACA
GCAAGTGGAA AAACCTTAAT CGGTGAAATG GCTTTCATAA ATAACCTTTT AAATGAAAAC
AAAGAACCAA CCGGAAAAAA GGCAATATTC ATTGTTCCAC TAAAAGCTTT AGCTACTGAA
AAGTTCGAAG AATTCAAGGA AAAATACGAG AAATATGGTC TTAAAATAGG TATTTCAATT
GGCGATTTTG ATTCAAAAGA AGACCTCAAT AAGTACGATT TAATCATAAC AACTTCAGAA
AAACTCGACT CATTAATCAG GCATAAAATA GACTGGCTAA AAGACGTTTC ATGTGTGGTA
GTAGACGAAA TTCATTTAAT CGGAGACGGT GAAAGGGGGG CTACTTTAGA AGTGGTTTTA
ACAATTCTAA AGACGTTAAA TTTACAAATT ATTGGACTCT CGGCAACTGT TGGAAATCCC
GGAGAACTCG CAGACTGGTT AAATGCTAAA TTAATTATTG ACACTTGGAG ACCTATTGAG
CTTAGAAAAG CTACTTTCTT TGAAAATGTA ATTGAATACA CAAATTCAGA AGAAAAGAAG
GTTGAAAATG AACATAAAAA CCCATTAAAT AATTTAGTTA TCGATACGGC AAAAGAAGAA
GGCTCTTGTT TAATCTTTTG TTCTTCAAAA AGAAACGCAG TCGGGGAAGC TAAAAAGCAC
GATGTAAGGA AGTATTTACA CCCCTTAGAA ATTGAAAAAC TAAACGAAGT TGCAGAAGAC
CTTCTTGAAT CAGACTCAGA GGGAAAAACT GTTAAAACTC TTTCCGACTG CGTTAGAAAA
GGAATTGCCT TTCACCATGC AGGACTCACG ACAAAACAGA GAAAAATTGT TGAAACTGCA
TACAAAAATC GAATTGTAAA AGTTATTTGC TGTACTCCAA CACTCTCAGC AGGGTTAAAC
CTTCCTTGTA GAAGGGCAAT AATCCGAGAC GTTAAGAGAT TTTCTGAAAA AGGAATGAAA
TTTATTCCGG TTATGGAAAT TCAGCAGTGC ATTGGTAGAG CAGGAAGACC CGGGCTTGAC
CCTTATGGTG AGGGAATAAT TGTTCTGAAG AAAAAAGGCG ATATTACTGA AGCTTTGAAT
CTTTTAAACG GAGACCCTGA ACACATCTAT TCAGGAATTG CCAACTATAA AAGTTTAGAA
AAGCACGTTT TAGGTTTGAT TGCGTCTGAT ATTACAAGAA CCAAGACAGA ATTATTCAAA
TTCTTAAAAA ATACGTTCTA TGCGTACCAG TACGATGATT TTCAAAAAAT TAAAAGAACT
GTTGAAGAAA TCCTGTTTGA CTTTAAAAAT GCTAAATTGT TAAGACCTGA AAATGAAATC
CTTGAAGTTA CGGCTTTAGG TTGTAGGGTA TCTGAACTCT ATATCTCGCC AAGTTCCGCA
ATACACATTT TAAACGGTTT GGCAGGACTT GAAGACTATT CGTTTGAAGA CCATATATTA
TTGACTCTCT CAGGAACTCA CGAAATGAAA CCAAAATTGA GAATGCCTGA TAATGATTCA
GATATTAGAA ATGAGCTTGA ATCTTTAGGT TATGAGTCAG ATGATGAATT GATTGATGAT
TTCTTCTATT CAAGACTGTT TAAAGCTTGG ATTTCTGAAA AATCAGACGA AGAAATCCAC
GAACATTACG CAGTAGAACC GGGAATTTTA CGATACAAAT TAGAGCAAAT GAACTGGATG
ATGTATTCAG CTAAAGAGCT TCTTAGAATT TCGGGAAACC TAAAAGATTA CTGGAATGAG
TTTTCAAATA TCGATGTCCG GCTTAAATAT GGGGCTTCTG AAGAACTTGT TGAACTTTTG
AAAATAAAAG GAATTGGTCG AGTAAAAGCA AGAAAACTCT ATGATGTTGG TTTGAAATCA
AGGGAAGACA TAAAGAAGAA TCCTTATCAA TTAGCCGCTC AACTGGGCAA TAAAACCGCT
GCAAAGGTAC TAAAAATTCT TAAAGTTCCT TACGATGTGA ATGTTTTTGA ACAGAAAAAA
GGGCAACAGA CTTTAATCTT GTAA
|
|---|
| Protein sequence | MSVFEVLKDF GITELRPPQK KVLDNGLLDK TKNFLVCIPT ASGKTLIGEM AFINNLLNEN
KEPTGKKAIF IVPLKALATE KFEEFKEKYE KYGLKIGISI GDFDSKEDLN KYDLIITTSE
KLDSLIRHKI DWLKDVSCVV VDEIHLIGDG ERGATLEVVL TILKTLNLQI IGLSATVGNP
GELADWLNAK LIIDTWRPIE LRKATFFENV IEYTNSEEKK VENEHKNPLN NLVIDTAKEE
GSCLIFCSSK RNAVGEAKKH DVRKYLHPLE IEKLNEVAED LLESDSEGKT VKTLSDCVRK
GIAFHHAGLT TKQRKIVETA YKNRIVKVIC CTPTLSAGLN LPCRRAIIRD VKRFSEKGMK
FIPVMEIQQC IGRAGRPGLD PYGEGIIVLK KKGDITEALN LLNGDPEHIY SGIANYKSLE
KHVLGLIASD ITRTKTELFK FLKNTFYAYQ YDDFQKIKRT VEEILFDFKN AKLLRPENEI
LEVTALGCRV SELYISPSSA IHILNGLAGL EDYSFEDHIL LTLSGTHEMK PKLRMPDNDS
DIRNELESLG YESDDELIDD FFYSRLFKAW ISEKSDEEIH EHYAVEPGIL RYKLEQMNWM
MYSAKELLRI SGNLKDYWNE FSNIDVRLKY GASEELVELL KIKGIGRVKA RKLYDVGLKS
REDIKKNPYQ LAAQLGNKTA AKVLKILKVP YDVNVFEQKK GQQTLIL
|
|---|
| |