| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_0801 |
|---|
| Symbol | |
|---|
| ID | 4270565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 895275 |
|---|
| End bp | 897281 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638125552 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_741645 |
|---|
| Protein GI | 114319962 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.950377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCATT ATCTTGCAGG TCTTCCGCGC CCCGTAAAGC AGGGGCTGAT GGTCCTGGCC
GACGCTGCTG TAGTGGTCCT GGCCCTTTGG GCCGCTCTGG TCCTTCACGC GGGGGTCGGC
CCGGCCAGTT TTGATCCCAC CCTGTGGGCG TTGTATGCGC TGGTGCCCAT CGTGGCCATC
CCCCTGTTCG CACTCTTCGG TCTTTATCGC GCCGTGGTCC GATGGATGGG TGCCCACGCC
CTGGCCACCA TCACCAAGGG GGTGATGGCC TCCACCCTCG CCCTGACCGT AATCATTTCG
GTAATGCCGC AATGGACACT CAGCCTTCCG GTTGTCCTCA ATTTCGCCCT GCTCAGCCTG
TGTGCCGTTG GCGGCCTGCG CATCGTGGTG CGAGGCTGGT TCCGGCGCGC GGCCAACGGA
GAGGGAGATC GCCACCGGCA GCCGGTGGTG ATCTACGGGG CCGGCAACTG CGGCATCGAG
CTGGCGAGCA GCCTGATCGG CAATACCCAT TACCGCCCGG TGGCCTTTGT CGACGATGAC
CCGCGCAAGC AGGGCACCAT CATCCAGGGA GTCAGCGTGC ATCCTCCGCA ACGCCTGCCG
GCATTGATCG ACCGTGAGCG GGTTGCCTAC GTGCTGCTGG CCATGGCCCG ACTGGCCCGG
CCGGAGCGAC GCCGCATCGT CGAGCGGCTG GAGCCCCTCA ACGTGCACAT CCTCACCATC
CCGCCGCTGT CCGATCTGGT CACCCGACGC GCCGGCATGG AGGACGTGCG CGAGGTGGAG
GTGGAGGACC TGCTGGGCCG GGATGCGGTG GCCCCGCGGC CGGAACTGCT GCGGCGCTGT
ATCGCCGGTC ATGCAGTCAT GGTGACCGGG GCCGGCGGCT CCATTGGCTC TGAGCTCTGC
CGGCAGATCC TCCGCCTGCG GCCACGGCGA CTGGTCCTGG TGGAGCGCAG TGAGTTCGCG
CTCTACGCCA TTGAGAAGGA GCTCCGCTAC CAGATGGAGG GTCAGGCGCA CCAACCGGAG
CTGCACCCGG TGCTCGGGGA TGTGACCGAC GGCGAGCGCA TGCAGGCGCT GATGAGCGCC
TTCGCCATCC ACAGCGTCTA CCACGCCGCC GCCTACAAGC ACGTACCACT GGTCGAGGCG
AACAGCCTGC AGGGCATCCA TAACAACGTC TTCGGCACCC TGCGCACGGC GGAGGCCGCG
GCCGCCGCCG GCGTCCCCCA CTTCGTGCTG ATCAGTACCG ACAAGGCGGT GCGCCCCACC
AATGTCATGG GCGCGAGCAA GCGGATGGCG GAACAGGTGG TTCAGGACCT GGCCCGCCGG
CAAGGTGTCC CCACGGTGTT CTCCATGGTC CGCTTCGGCA ATGTCCTCGG CTCGTCCGGC
TCAGTCGTGC CGCTGTTCCG CGAACAGATT CGCAAGGGCG GTCCGGTCAC GGTCACCCAT
CCCGAGGTCA CCCGCTACTT CATGACCATC CCCGAGGCCG CCTCCCTGGT GATCCAGGCC
GGCGCCATGG CGCGGGGCGG CGAGGTGTTT GTGCTGGACA TGGGCGAGCC GGTCCGGATC
GACGACCTCG CCCGGCGGAT GATCCGGCTG TCCGGGCTGA CGGTGCGCGA CGAGGCGCGC
CCGGCGGGCG ATATCGAGAT CCGTTACACC GGCCTGCGCC CGGGCGAGAA GCTCTATGAG
GAATTGCTGC TGGGCGAGGC GGTGACCGGC ACCGACCACC CCATGATCTG CCGGGCCAGC
GAGGCGCGGC TACCCGCGGA TGGCCTGCAG CGCCTGCTGG AGGATCTGCG CCGGGCCGCA
GCCCGGTTCG ATTGTGAGGC CGCCCGCCAG TTGCTGGCCG GGGCGGTGGA GGGCTATGAG
GCCCCCGGCC CGTGCAACGA CGTGCTGGGC CGGCGATTGG CAGTGGCGGC GGCCAAGCCG
TCGCCGGCGA TCAGTCCTTG GCCCGCGCCT TGTACTGGTA CTGATAATAG TAGTAATCGC
TCGAGCGCCC ACTCCGTTTC GGGTTGA
|
|---|
| Protein sequence | MHHYLAGLPR PVKQGLMVLA DAAVVVLALW AALVLHAGVG PASFDPTLWA LYALVPIVAI
PLFALFGLYR AVVRWMGAHA LATITKGVMA STLALTVIIS VMPQWTLSLP VVLNFALLSL
CAVGGLRIVV RGWFRRAANG EGDRHRQPVV IYGAGNCGIE LASSLIGNTH YRPVAFVDDD
PRKQGTIIQG VSVHPPQRLP ALIDRERVAY VLLAMARLAR PERRRIVERL EPLNVHILTI
PPLSDLVTRR AGMEDVREVE VEDLLGRDAV APRPELLRRC IAGHAVMVTG AGGSIGSELC
RQILRLRPRR LVLVERSEFA LYAIEKELRY QMEGQAHQPE LHPVLGDVTD GERMQALMSA
FAIHSVYHAA AYKHVPLVEA NSLQGIHNNV FGTLRTAEAA AAAGVPHFVL ISTDKAVRPT
NVMGASKRMA EQVVQDLARR QGVPTVFSMV RFGNVLGSSG SVVPLFREQI RKGGPVTVTH
PEVTRYFMTI PEAASLVIQA GAMARGGEVF VLDMGEPVRI DDLARRMIRL SGLTVRDEAR
PAGDIEIRYT GLRPGEKLYE ELLLGEAVTG TDHPMICRAS EARLPADGLQ RLLEDLRRAA
ARFDCEAARQ LLAGAVEGYE APGPCNDVLG RRLAVAAAKP SPAISPWPAP CTGTDNSSNR
SSAHSVSG
|
|---|
| |