| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlab_1474 |
|---|
| Symbol | |
|---|
| ID | 4795584 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanocorpusculum labreanum Z |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008942 |
|---|
| Strand | - |
|---|
| Start bp | 1512129 |
|---|
| End bp | 1513469 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640100159 |
|---|
| Product | signal recognition particle protein Srp54 |
|---|
| Protein accession | YP_001030906 |
|---|
| Protein GI | 124486290 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0541] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.570422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000118802 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGACTTG ATACACTTTC CAACTCACTC AAAGACGCGA TGAAAAAACT CGCCGGCAAA
ACTGTCATCG ACCGTGCTGC CGTCGACGAA CTCGTTCGCG ATCTCCAGCG GGCTCTGCTC
TCATCCGACG TAAACGTCAA ACTCGTGATG GAGCTTTCCA AGCAGATCAA AGCCCGCTCG
CTGGACGAAG ATCTTCCCAA AGGCATCAAC GCCCGTGAAC ATGTTCTCAG GATCGTGTAT
CAGGAGCTGG TGAATCTTGT CGGCAAAGAG GCTGAGTTCT CCTTAAAACC GCAGAAGATC
CTTATGGCCG GTCTGCAGGG ATCGGGTAAG ACCACTACGA CCGGAAAACT CTGCCGCTAC
TTCCAGAGAA AAGGGCTGAA AGTAGGGGCG ATCGGCGCCG ACAACTTCAG GCCGGGAGCG
TATGCCCAGC TGGAAACGCT CTGTAAAAAG ATCAATGTTC CAAGTTACGG TGATCCAAAG
GAGAAAGACG CCGTAAAAAT CGTTAAAGAC GGACTTGCCG CTCTCAAAGA TGTGGATGTC
ATCATCGTCG ATACCGCCGG CCGTCATGCG CTGGAGGATG ACCTGATCGA TGAGATTACG
CAGGTCAACG CATACCTCAA CCCCGATCAC CGCTGGCTCG TCATCGACGC CGCTCTCGGT
CAGGCGGCCC GCGATCAGGC CAAACGGTTC CATGAAGCGA TCGGCATCGA CGGCGTTATC
GTAACCAAGA TGGACGGTAC GGCGAAAGGA GGAGGCGCCA TGTCTGCTGT CGCCGAGACC
CAGTCCGGAA TCGTTTTCAT CGGTAACGGT GAGACGATCG ACGATCTCGA ACGCTTCGAT
CCCAACGGAT TCATCTCCAG ACTTCTCGGT ATGGGCGATC TCAAAGCCCT CGTTGAAAAG
GCCGAAGAGT CGATGAACGC CGAGGATGTC GATGTCAACG CCATGCTTCG GGGAAAGTTT
ACGCTGAATG ATATGTACAA ACAGCTCGAA GCGGTTCAGA AGATGGGTCC GTTAAAGCAG
GTCCTCTCCA TGCTGCCGAT GGGCAACATG AACGTTCCGT CCGACGCTCT GGAAGGAACC
GCCGACAAGA TGAAAAAGTT TAGGATCATC ATGGACTCCA TGACCCCTCA GGAACTTGAC
GAACCTGCTT TGATCAACAC ATCCAGAATG ATACGGGTCG CCAAAGGTTC CGGTTCTTCG
GTTGAAGAGG TCAGGGATCT CATCAAATAT TATAAGATGA TGCAGAAAAC CCTGAAAGGA
TTCAGAGGAA ACAGAATGGC GATGGGCAAA ATGATGAAAC AAATGCAGAA AGGCGGCATG
GGACCTATGG GTCCAATGTA A
|
|---|
| Protein sequence | MGLDTLSNSL KDAMKKLAGK TVIDRAAVDE LVRDLQRALL SSDVNVKLVM ELSKQIKARS
LDEDLPKGIN AREHVLRIVY QELVNLVGKE AEFSLKPQKI LMAGLQGSGK TTTTGKLCRY
FQRKGLKVGA IGADNFRPGA YAQLETLCKK INVPSYGDPK EKDAVKIVKD GLAALKDVDV
IIVDTAGRHA LEDDLIDEIT QVNAYLNPDH RWLVIDAALG QAARDQAKRF HEAIGIDGVI
VTKMDGTAKG GGAMSAVAET QSGIVFIGNG ETIDDLERFD PNGFISRLLG MGDLKALVEK
AEESMNAEDV DVNAMLRGKF TLNDMYKQLE AVQKMGPLKQ VLSMLPMGNM NVPSDALEGT
ADKMKKFRII MDSMTPQELD EPALINTSRM IRVAKGSGSS VEEVRDLIKY YKMMQKTLKG
FRGNRMAMGK MMKQMQKGGM GPMGPM
|
|---|
| |