| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlab_0413 |
|---|
| Symbol | |
|---|
| ID | 4794491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanocorpusculum labreanum Z |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008942 |
|---|
| Strand | + |
|---|
| Start bp | 391347 |
|---|
| End bp | 393821 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640099066 |
|---|
| Product | DNA gyrase subunit A |
|---|
| Protein accession | YP_001029856 |
|---|
| Protein GI | 124485240 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0903108 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000217687 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | TTGACATCTG AAGAGAACAC CACGCACAAA ACGGTCTCGA TCAACATCGA GGATGAGATG
AAGAACTGCT TCATCGATTA CGCGATGAGT GTCATCATTG GGCGTGCGAT CCCCGATGTC
CGTGATGGTC TGAAACCGGT CCACCGGCGT ATTCTGTATG CCATGTTCCA CGACGAGGGG
AACACGAGTG ATAAGGCATA CAAGAAATCG GCCAAGGCAG TCGCCGCCAC CATGGGTAAT
TATCACCCGC ACGGTGACTC TGCGATCTAC GACACACTCG TGAAGATGGC CCAGCCGTTT
TCGTATCGCT ATACGCTGGT GGACGGGCAG GGTAACTTCG GTTCGATCGA CGGCGACTCG
GCAGCAGCAA TGCGTTATAC CGAGGCGCGC CTTACCAAAG CGGCAGAATC CCTTTTGGAG
GATATCGACA AGGAAACCGT CGATTTCGTG CCGAACTTCG ATGAATCATC CCAGGAACCG
GATGTTCTCC CCAGCCGGAT CCCAAACCTC CTCGTAAACG GTACGACGGG TATTGCTGTC
GGTATGGCGA CCAACATGAT GCCGCACAAC CTCGGCGAGG TCTGCGATCT GGTCGATGCC
TACATCGATA ACCCGGAGAT GTCTCTTGAA GAGATGATGA AGATCCTTCC GGCCCCGGAT
TTCCCGACCG GCGGTAAGAT CATGGGCACC GACGGGATCG TCAATGCCTA TCAGACGGGT
CAGGGGAAAG TTGTTCTCCG CGGCATTGCC GAGATCGAGG AACGCAAAAA AGGATTCGAG
CAGATCGTCA TCACCGAGAT CCCCTATCAG GTGAACAAGG CGGCGATGAT CGAAAAGATT
GCCGATCTTG TAAAATCGAA GACGATCGAA GGCATCAGCG ACATCCGGGA CGAGTCCGAT
AAAGACGGTA TCCGTGTTAT TATCGAACTT AAGCAGAATA CCCAGGCAAA CGTTGTTCTC
AATCTGCTGT ATAAACATAC TCAGCTCGAA AGTTCGTTCG GCATTATCAA TCTCGCGATC
GTTGACAAGA AACCGAAGAT CCTGTCCCTG GCAGAACTTC TGCGTCATTT CATCGCACAC
CGTGTCGATG TCGTTCGGCG TCGGTCCCTT TTCGATCTGC GGAAAGCCGA GGAACGCATG
CATATTCTCT CGGGACTTTT GAAGGCTCTC GATATGATCG ATGTGGTAAT CGCCACCATC
CGTGCTTCGC CCGAAGTTTC GGTAGCTCAG GAAGCGTTAG TCTCTAAACT TGGTTTCTCG
GAAGCACAGG CCGAGGCGAT TCTCAAAATG CAGTTGCGCC GTCTCGCGGC CCTTGAACAG
CAGAAGATTC TGGATGAGAC CACCTCGCTC CAGTTGGTTA TTGACAAACT TACCTGGATA
CTTTCGTCCG AGGAGAACAT CCTCTCGGTT GTCAAAACCG AGACGTCGGA GATTCGCACG
GCATATGCCG ATGAACGCCG GACCCAGATC GATTACACTG CAAACACTGA CTTCAACGTG
ATGGATCTGA TCCCCGATGA ACAGACCCTT GTGATGCTCA CGACCCAGAA TTACATAAAA
CGCGTGCCTC TCGATCTCTA TCGCCAGCAG AAACGCGGTG GCAGAGGAGT GATCGGCATG
ACCACAAAAG ACGAGGATTC CGTGGACAAA GTCTTCCTGG CAAATACGCA TGATTATCTG
CTGTGTTTCA CCAACAAAGG CAGAGTCTAC TGGCTCCGGG TCTATGAGAT TCCCGAAGGA
TCGAGAACAA GTAAGGGTAA GGCGATCGTA AATCTGCTGA ACCTTACCGA CGAAGAGGTT
TCGGCGGTCA TCCCGATGCG TGACTTCGAT GCTGAAAAGA ATCTTCTTTA TGCCACGAAG
AAAGGCCGTG TTGGCAAGTT CAGTCAGGAT CTTTTCTCAC GGCCGAGGAC CGGAGGAATT
ATCGGCATAA CACTTCTTGA CGGCGATGAA CTTGTGGACG TTGTCGTAAC CGACGGCAGT
ACAGATGTCG TTCTTACAAC TGCATTTGGT CAGGCACTTC GCTTCTCCGA GGATGAGGTT
CGGGCCACCG GCCGCGGTAC ACAGGGTGTT ATTGGTATCA GACTGAAGTT CGAGGGTGAT
TACGTCTGTG CTCTGACGCT TGTCGAAACC CAGTATCTTC TGATGATCAC CGACAAAGGA
TTCGGCAAAC GGACTGAGTT CGAAGAGTTC CGTGGACACG GCCGCGGCAC ACAGGGCGTG
AAATCTATCG TGGCGAACTT CGAGCGCGGC AAGGTCGTCT CCTCGCTTGC GGTCTCCGAT
GATGATCAGG TCATCATCAC GACGGCTGGG GGAGTTGTTC TCAGGACTTC TGCATCGGAT
ATTTCCATCC AGGGACGCGG AACGAAAGGC GTTCGTGTAA TTCGTGTCGA CTCCGGCGAC
AAGGTCACGA GTGTTGCCAT CGTCCCTCCC GACGAGGACG AACCTGCCCT GCCGGAAGCG
ACAGACGAGG CCTGA
|
|---|
| Protein sequence | MTSEENTTHK TVSINIEDEM KNCFIDYAMS VIIGRAIPDV RDGLKPVHRR ILYAMFHDEG
NTSDKAYKKS AKAVAATMGN YHPHGDSAIY DTLVKMAQPF SYRYTLVDGQ GNFGSIDGDS
AAAMRYTEAR LTKAAESLLE DIDKETVDFV PNFDESSQEP DVLPSRIPNL LVNGTTGIAV
GMATNMMPHN LGEVCDLVDA YIDNPEMSLE EMMKILPAPD FPTGGKIMGT DGIVNAYQTG
QGKVVLRGIA EIEERKKGFE QIVITEIPYQ VNKAAMIEKI ADLVKSKTIE GISDIRDESD
KDGIRVIIEL KQNTQANVVL NLLYKHTQLE SSFGIINLAI VDKKPKILSL AELLRHFIAH
RVDVVRRRSL FDLRKAEERM HILSGLLKAL DMIDVVIATI RASPEVSVAQ EALVSKLGFS
EAQAEAILKM QLRRLAALEQ QKILDETTSL QLVIDKLTWI LSSEENILSV VKTETSEIRT
AYADERRTQI DYTANTDFNV MDLIPDEQTL VMLTTQNYIK RVPLDLYRQQ KRGGRGVIGM
TTKDEDSVDK VFLANTHDYL LCFTNKGRVY WLRVYEIPEG SRTSKGKAIV NLLNLTDEEV
SAVIPMRDFD AEKNLLYATK KGRVGKFSQD LFSRPRTGGI IGITLLDGDE LVDVVVTDGS
TDVVLTTAFG QALRFSEDEV RATGRGTQGV IGIRLKFEGD YVCALTLVET QYLLMITDKG
FGKRTEFEEF RGHGRGTQGV KSIVANFERG KVVSSLAVSD DDQVIITTAG GVVLRTSASD
ISIQGRGTKG VRVIRVDSGD KVTSVAIVPP DEDEPALPEA TDEA
|
|---|
| |