| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mkms_2986 |
|---|
| Symbol | xerD |
|---|
| ID | 4610816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. KMS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008705 |
|---|
| Strand | - |
|---|
| Start bp | 3118699 |
|---|
| End bp | 3119655 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639792652 |
|---|
| Product | site-specific tyrosine recombinase XerD |
|---|
| Protein accession | YP_938970 |
|---|
| Protein GI | 119869018 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0431132 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCCT CAGCTGTTCG ACGGTCGGCG CTCGACGATC AGCTGCAGGG CTACCTCGAC
CATCTGACCA TCGAACGCGG CGTCGCCGCG AACACGCTGA GCTCGTACCG CCGCGATCTG
CGGCGCTATT CGGAGCACCT CACCGGCCGC GGGGTCGAGG ACCTCGCGAA GGTCACCGAA
TCCGATGTCA GCGACTTCCT GGTCGCCCTG CGGCGCGGTG ATCCCGACAC CGGGGCCCAG
GCGCTGTCGG CGGTCTCGGC GGCGCGGGCG CTGATCGCGG TGCGGGGTCT GCACCGCTTC
GCGACCGCCG AGGGGCTGAC CGATGTCGAC GTGGCCCGCG CGGTCAAACC GCCCACCCCC
GGGCGCCGGT TGCCCAAGAG CCTGTCGATC GACGAAGTCC TCGCACTCCT CGACGGCGCC
GGAGGTGACA GCGAGGCCGA CGGCCCCCTC ACACTGCGTA ACCGCGCACT GCTCGAACTG
CTGTACTCGA CCGGCGCGCG GATCTCCGAA GCGGTCGGCC TCGACATCGA CGACGTCGAC
ACCCATGCGC GCTCTGTGCT GCTGCGCGGC AAGGGCGGGA AGCAACGGCT GGTGCCGATC
GGCAGGCCTG CGGTGAGCGC GCTGGACGCC TACCTGGTCC GGGGGCGGCC GGATCTGGCC
CGCCGCGGCC GCGGTACGCC GGCGATCTTC CTCAACGCGC GCGGGGGGCG GCTGTCGCGC
CAGAGCGCGT GGCAGGTGCT GCAGGACGCC GCCGAGCGGG CCGGGATCAC GTCCGCGGTG
TCGCCGCACA CGTTGCGGCA CTCCTTCGCG ACCCATCTGC TCGATGGCGG CGCCGATGTG
CGCGTCGTCC AGGAATTGCT CGGGCACGCC TCGGTGACCA CGACGCAGAT CTACACCATG
GTGACGGTGC ATGCGCTGCG CGAGGTGTGG GCGGGGGCGC ATCCGCGGGC CCGGTGA
|
|---|
| Protein sequence | MAPSAVRRSA LDDQLQGYLD HLTIERGVAA NTLSSYRRDL RRYSEHLTGR GVEDLAKVTE
SDVSDFLVAL RRGDPDTGAQ ALSAVSAARA LIAVRGLHRF ATAEGLTDVD VARAVKPPTP
GRRLPKSLSI DEVLALLDGA GGDSEADGPL TLRNRALLEL LYSTGARISE AVGLDIDDVD
THARSVLLRG KGGKQRLVPI GRPAVSALDA YLVRGRPDLA RRGRGTPAIF LNARGGRLSR
QSAWQVLQDA AERAGITSAV SPHTLRHSFA THLLDGGADV RVVQELLGHA SVTTTQIYTM
VTVHALREVW AGAHPRAR
|
|---|
| |