| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mjls_2174 |
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| Symbol | |
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| ID | 4877894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Mycobacterium sp. JLS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009077 |
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| Strand | - |
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| Start bp | 2271209 |
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| End bp | 2272651 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640139471 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001070451 |
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| Protein GI | 126434760 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.512894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00228971 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCAGCGA CAAAGGCAAG CCCGGCAACC GAAGAGCCGG TGAAGCGCAC CGCTACCAAG
ACCCCCGCGA AGAAGACCGC CGCGGCGAAG GCCCCAGCCA AACGCGCGGC CAAGGGTACG
GCGACGACCC GCGGCCCGGC CAAGAAGGAC GGCGCCGCCC CGCGCGGTCG TGGCAAGAAG
TCCACCGCAC CCGAGGCCGG TGCCGCCGAC GCCCTCGCCG ACGACGACCT CGACACCGAC
GACACCCTCG AGGCCGAACC GGATATCGAC GTCGACGACG CCGACCTGGA CCTCGAGGAT
CTCGACACCG ACGACGACTC GTCCGACGAC GGCGACGACG CCGACACCCC CGACGCCAAG
GTCAAGGCCG CCCCCAAGGG CGGCGCGGTG CCCGCCGCCC CCGCCACCGA GGACGAGGAG
ATCGCCGAGC CCTCCGAGAA GGACAAGGCC TCCGGCGACT TCGTCTGGGA CGAGGAGGAG
TCAGAGGCGC TGCGGCAGGC CCGCAAGGAC GCCGAGCTCA CCGCCTCCGC CGACTCGGTG
CGCGCGTATC TCAAGCAGAT CGGCAAGGTG GCGCTGCTCA ACGCCGAGGA GGAAGTCGAG
CTCGCCAAGC GCATCGAGGC CGGTCTGTTC GCCACCCAGA AGCTGGCCGA ACTCGCCGAA
AAGGGTGAGA AGCTGCCGGT GCAGCAGCGC CGCGACATGC AGTGGATCTG CCGCGACGGC
GACCGCGCCA AGAACCACCT GCTGGAGGCG AACCTCCGCC TGGTGGTGTC GCTGGCCAAG
CGCTACACCG GCCGTGGCAT GGCGTTCCTG GACCTCATCC AGGAGGGCAA CCTCGGTCTG
ATCCGCGCGG TCGAGAAGTT CGACTACACC AAGGGTTACA AGTTCTCCAC CTACGCCACC
TGGTGGATCC GGCAGGCGAT CACCCGCGCG ATGGCCGACC AGGCGCGCAC CATCCGCATC
CCGGTGCACA TGGTCGAGGT CATCAACAAG CTGGGCCGCA TCCAGCGCGA GCTGCTCCAG
GACCTGGGTC GCGAACCCAC GCCCGAAGAG CTCGCCAAGG AGATGGACAT CACGCCGGAG
AAGGTGCTGG AGATCCAGCA GTACGCGCGT GAGCCGATCT CGCTGGACCA GACGATCGGC
GACGAGGGCG ACAGCCAGCT CGGCGACTTC ATCGAGGACT CCGAGGCCGT GGTGGCCGTG
GACGCGGTCT CGTTCACGCT TCTGCAGGAT CAGCTGCAGT CGGTGCTGGA GACGCTGTCG
GAGCGCGAGG CCGGCGTGGT ACGGCTGCGG TTCGGCCTCA CCGACGGCCA GCCGCGCACG
CTCGACGAGA TCGGCCAGGT CTACGGCGTC ACGCGGGAAC GCATCCGCCA GATCGAGTCG
AAGACGATGA GCAAGCTCCG GCACCCCAGC CGGTCGCAGG TGCTGCGCGA CTACCTCGAC
TGA
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| Protein sequence | MAATKASPAT EEPVKRTATK TPAKKTAAAK APAKRAAKGT ATTRGPAKKD GAAPRGRGKK
STAPEAGAAD ALADDDLDTD DTLEAEPDID VDDADLDLED LDTDDDSSDD GDDADTPDAK
VKAAPKGGAV PAAPATEDEE IAEPSEKDKA SGDFVWDEEE SEALRQARKD AELTASADSV
RAYLKQIGKV ALLNAEEEVE LAKRIEAGLF ATQKLAELAE KGEKLPVQQR RDMQWICRDG
DRAKNHLLEA NLRLVVSLAK RYTGRGMAFL DLIQEGNLGL IRAVEKFDYT KGYKFSTYAT
WWIRQAITRA MADQARTIRI PVHMVEVINK LGRIQRELLQ DLGREPTPEE LAKEMDITPE
KVLEIQQYAR EPISLDQTIG DEGDSQLGDF IEDSEAVVAV DAVSFTLLQD QLQSVLETLS
EREAGVVRLR FGLTDGQPRT LDEIGQVYGV TRERIRQIES KTMSKLRHPS RSQVLRDYLD
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