| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_2080 |
|---|
| Symbol | |
|---|
| ID | 3923664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | + |
|---|
| Start bp | 2357725 |
|---|
| End bp | 2361384 |
|---|
| Gene Length | 3660 bp |
|---|
| Protein Length | 1219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637897686 |
|---|
| Product | exonuclease SbcC |
|---|
| Protein accession | YP_503506 |
|---|
| Protein GI | 88603328 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00618] exonuclease SbcC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC TGCAACTGAA ATTTTCAAAC CTGAATTCCC TTGCCGGTGA CTGGACCATC
GACTTTTCCA ATCCCGCATT TACCTCTTCC GGTATTTTTC TGATCACAGG CCCGACCGGA
TCAGGGAAAA CGACCGTTCT TGATGCCATC TGTCTGGCAC TGTACGGGAA AACACCCCGG
CTTGGGAAAG TTACCAAAAC GAACAATCAT ATCATGACCA GGCATACCGG TGAATGTTCT
GCCGAAGTCG TATTTGAATC TCAAAAAGGG AGATTTGTCT GTCACTGGAA CCAGCGGCGG
GCAAAAAATA AGCCGGACGG TGAGCTGCAG CCCCCGCAGC ATGAGATCAG CCGGGCTGAT
ACCAAAGAGA TACTGGCTTC AAAGATAAAC CAGGTCCAGG AGATTGTGAA AGAAGTAACC
GGCATGGACT ATGACCAGTT TACGAGATCC ATCCTTCTTG CCCAAGGGGG ATTTGCCGCT
TTTCTTCAGG CCGGGGCAGA TGAACGGGCA CCAATCCTTG AGCAGATAAC CGGAACAGCC
ATCTATTCAA AGTTATCAGA AAAGACTTAT GAGCGATACA CGAGTGAGCG GGAAAAACTT
GAGCAGGTAA CCCGTGAATG TGATCTCATA TCTATCCTTT CTCCTGAAGA AAAGGAGAGC
ATAGAGCAGC AGATAGAGGA ACTCCGGAAG GCTGCAGCAG GGAAAGATGT TATGATCATC
CGGACCAATG AGGCCATCCA GTGGATTGAA ACACTTGAGA AACTCCGCAG TGAAATCGAT
GGTCTTGAGA CGGATGCAAA ACACCTTGAC GAGAAAAAGG CTGCCTTCGA GCCTTCCAGA
ATAGCACTTC TTGCAGCACA GAAAGCGGCA TCATTCCAGG GGTTATATGC CCCGCTTGAG
TTGAAACGGG AGACACTTCA AAAGGATACC AGACAGTATG AAGAAACAGC CCGTATGAGA
GACTCACTCA AGGCTTCGCT TCCCGACGTT GAGAGTCTGG TTCTGAGTGC TAAAACCGAA
ATGGACCAGG CTGAACGGGA ACGAGAAGAA GGATATGTAC TCATCAATGA GATCAGGACC
CTTGATAAAC AGATCAGAGA GAAGGAATCA GAGCTGTATA AAAAGAAAGA AGAATTAAAG
GGACTACAGG ACCTTCTGGC AGGATATACG AGTGAGCAGG AACTGGCAGA AAAGAAACAA
CAGACAATTT TAAGAGAAAA AAGTGATGCT GCCAGGTATA TTGATCAAAA TGCCAGGGAT
GCAGTCATCA GGGATATCTA TTCAGGAACT GAAGAGAAGA TCCACCAGAT CCTGAATGAG
ATGAAAACAA TCGGGAGGTT GAACAAAGAC TGCTCGGAGC AGAAACGACT GGTTCATTCA
AAGAGACAGG ACCTGGAAGA CCTCAAAAAG GACCGGGAGA AGAAGCAACA AGCATTACAG
GTACTTGAAG ACCAGCAAAA AATCCGAGAA GGAGAACTCG AAAAAATTCT GTCCGGCACC
ACAATCGGAG AACTGCGACA GAGGCGTGAT GATAAAAAGG TCAGAATTGA ACATCTGAAC
CGGCTGAAAG AAATTTTGAC CGGAAAAAGA GAGATATCTG CAAATAAAGA AGCACTAAGT
CTGAAACGGG ATGACCTTAT CCATTACCTG CAGTCATCCG GATATGAAAA AGAACGCCTC
GGGTCAGATC TCAAACATCG TGAAGAACTC CTGACTACAA AGCGGACGGC TGCATTCCTA
GCAGCGAAGG TCAGAGATCT CGCCACAGAG AGAAATCAGC TTGTAGACGG AGAACCCTGT
CCACTGTGTG GCTCCCTTCA CCATCCATTT GTAACAGAAC AGGAGATTAA ACCTGATGAG
ATCATCAGTG ATTTTGTAGA AGAAGAAAAG AAGATCAAGG ATCTTACCAG GGAACTGACC
AGCCTTACGG CAATAATTGC TGAAAAAGAA GGTGAGCTCA AAAGATGCAC TGAGGATATC
ACCGAATGCG ACGCTCAACT GAATGAACTG AACCGGGCAT GGAAAGAGGG GGCTGAACTC
CATGGCATAC ATGCAGAAAC CGATGAAAGA ACCCTTGAAT CATGCATAAA ATCTGCTGCA
TCAGAACTCG GGAGTCTCGA GGCAACACTC CGTACTGCAG AGCAATATGA CGAGCAGATC
AAAAAAGCAT CTCCCCTTAT TAGTACGAAC CGGGAAACCC TGATCTCCCT TGAGAAGAAC
TACAGGGAGA AGGAGTTTGA GATTATATCA GGTGAAACCA GAATCGGGGA GATACAGGAG
CTGATTGCAG CCAGTGAATC GAAGATATCC ACCTCTTTTC TAGAACTGCA GCCAGTACTT
GCCGATCTCG GGTGTTCCAT AAATCAGGAT ACCAACATGC CGGCACTCCT GCTCACTTTG
AAGAACCGAC AAAAAAGATT TCAGGAGCAG GAAGACAGGA TAAAGTCCTG TGAAGTCGGG
CTTCAGGAAT TACATGCAAA ATTGAGTGGT CTCATTGCAA GGATATCTGA AAAAACCAAT
GAGATAACCA GAACGCATGA AGCCATAAAG GAGAAGGAAT TAACGCTGCA TGCCCTGAAA
AACGAGCGAA ACAATAAATT TGGAGAGAAG GATACTGACT GTGAAGAGAA GCGTCTGGCC
GAAGCGGTTA AAAAAGCCAG CGAGATATTC GAGACCAGGC AGAAGGAGAA GAACGATCTC
TCCAACCGGC TGCAATCACT CGAAGGTCTT CTTTCAGATC TTGAGAAACG AATTTCAGAA
GCTCAACAGG ACATCAGTTC ATCTCTTGAC GAATTTCTCT CCCATATCCG ACAGGCAGGA
TTTCAAGACG AAGAGGCATA TACATCTGCC CTGATGAAGC AGGAAGAGAT GGTCCGGCTT
GAAAAGGTAT GGGAAGATAT CAGAACCGAA GAGACCCGGA TACGAGAGCG GAAAATATCT
GCAGAAACCA GGTATGTGGA AGAGCAGAAG AAAAATCTCA CGACAAAACC GGCTTTGGAC
CTGAAAGCAG ACCTAGAGGA GTTACAGAAA CAAAAAGACC TATATATAGC AGATATTGGG
AAGAACCAGG AGAAACTTAT CAGACATGAA GAGATGGTAC GGCAGCAGCG TGAGAAGATT
GCCATCCGGG ATGCCCGGCA GCGGGAGGTG AATAAATGGC ACCGTCTCAA TGAGCTCATC
GGTTCAGCGG ATGGGAAGAA ATTCAGGGTG TTTGCCCAGG GACTCACATT CTGTATTCTC
CTCAGTCATG CAAACCAGCA TTTACAACGC ATGACCGACC GGTACATCCT TATTCAGGAC
AAGGATCTCC CCCTGGACAT GCAGGTCATC GACACCTGGC AGGGTGGTGT GGTCAGGTCA
GTAAAGAACC TGTCAGGAGG AGAGATTTTC ATGGTCAGTC TTGCCCTGGC TCTTGGCCTT
TCACATATGG CAAGTCAGAA TGTCAGGGTT GATTCCCTCT TCCTTGATGA AGGATTTGGA
ACGCTTGATG ATGATGCTCT TGAAACCGCC CTTTCCACGT TATCCGGTCT TGAGCAGGAG
GGGAAACTCA TCGGCGTTAT CTCGCATGTA TCGGCACTCA AAGAGAGGAT CCCTGTCCGT
ATATCAATAG AGAAAGGAAG CAACGGAAGG AGTACAATTC TTCTTCCCTA TCTCTTCTGA
|
|---|
| Protein sequence | MKILQLKFSN LNSLAGDWTI DFSNPAFTSS GIFLITGPTG SGKTTVLDAI CLALYGKTPR
LGKVTKTNNH IMTRHTGECS AEVVFESQKG RFVCHWNQRR AKNKPDGELQ PPQHEISRAD
TKEILASKIN QVQEIVKEVT GMDYDQFTRS ILLAQGGFAA FLQAGADERA PILEQITGTA
IYSKLSEKTY ERYTSEREKL EQVTRECDLI SILSPEEKES IEQQIEELRK AAAGKDVMII
RTNEAIQWIE TLEKLRSEID GLETDAKHLD EKKAAFEPSR IALLAAQKAA SFQGLYAPLE
LKRETLQKDT RQYEETARMR DSLKASLPDV ESLVLSAKTE MDQAEREREE GYVLINEIRT
LDKQIREKES ELYKKKEELK GLQDLLAGYT SEQELAEKKQ QTILREKSDA ARYIDQNARD
AVIRDIYSGT EEKIHQILNE MKTIGRLNKD CSEQKRLVHS KRQDLEDLKK DREKKQQALQ
VLEDQQKIRE GELEKILSGT TIGELRQRRD DKKVRIEHLN RLKEILTGKR EISANKEALS
LKRDDLIHYL QSSGYEKERL GSDLKHREEL LTTKRTAAFL AAKVRDLATE RNQLVDGEPC
PLCGSLHHPF VTEQEIKPDE IISDFVEEEK KIKDLTRELT SLTAIIAEKE GELKRCTEDI
TECDAQLNEL NRAWKEGAEL HGIHAETDER TLESCIKSAA SELGSLEATL RTAEQYDEQI
KKASPLISTN RETLISLEKN YREKEFEIIS GETRIGEIQE LIAASESKIS TSFLELQPVL
ADLGCSINQD TNMPALLLTL KNRQKRFQEQ EDRIKSCEVG LQELHAKLSG LIARISEKTN
EITRTHEAIK EKELTLHALK NERNNKFGEK DTDCEEKRLA EAVKKASEIF ETRQKEKNDL
SNRLQSLEGL LSDLEKRISE AQQDISSSLD EFLSHIRQAG FQDEEAYTSA LMKQEEMVRL
EKVWEDIRTE ETRIRERKIS AETRYVEEQK KNLTTKPALD LKADLEELQK QKDLYIADIG
KNQEKLIRHE EMVRQQREKI AIRDARQREV NKWHRLNELI GSADGKKFRV FAQGLTFCIL
LSHANQHLQR MTDRYILIQD KDLPLDMQVI DTWQGGVVRS VKNLSGGEIF MVSLALALGL
SHMASQNVRV DSLFLDEGFG TLDDDALETA LSTLSGLEQE GKLIGVISHV SALKERIPVR
ISIEKGSNGR STILLPYLF
|
|---|
| |