| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_0955 |
|---|
| Symbol | |
|---|
| ID | 3923237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | + |
|---|
| Start bp | 1064507 |
|---|
| End bp | 1066414 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637896591 |
|---|
| Product | tetratricopeptide TPR_2 |
|---|
| Protein accession | YP_502424 |
|---|
| Protein GI | 88602246 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.750671 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATG AAGATCCCAT AAAAATTCTG CAGGTACGCT TTGCAAAAGG AGAGATATCA
GCAGAGCAGT ATGAGCAGAT GCTTTCTTTT CTCATCCGGG ATGTTTCATC ATTTAAACAG
ACAGAAACAA AAGAGAAACC TGATATTATT GAAACTCCTT TGGAGCAGGA AACCACTCCG
ACTGTAGAAC CAGAAAAACC TGAGTTTGCT GATGATGCTG AAGCAGAAGA GATTGCAGTC
ATCGAACCTG ATTCAACACT CACCGAACCT GAACGGACGA CGGTAAAAGA GATCGCAACA
GCAATAGCAA ATGCCGAAGA ACCGGTTTCT TCAGACACTG AATCATTGGG AATAGAAGTA
ACCGAAGAGA CGGAAACTAA TGAGAGTGAA GAAGTACCAG CTGGTGAAGA AGACTTTGCG
GCTGGCACTG TACTTGATAC CTCGATATCT GATGAGCAAA TTGAAGCGAT TGAAATTTCT
GAAGAGATCC CAGAGGAAGT AACAGAGAAA AAGGAGAGTG CTGAGAGATT TTTATCCCAG
GAGGATCTCG GAAATGTCTG TTATGTTACT GCGGTAAATC TGGTCCAGGC CGGGGAATTT
GAAAAAGCAT ATCCCTTTAT CGAAAAATCT CTGACCATTC AACCAGAACT GACATTATCT
TGGCTTTATA AAGGATTCAT TCATCACAAC CGGAAGGAAT ACGAAGAAGC AATCACCTGT
TTTGATAAGG TACTAGCTAA AGATCCTTTT CAAATCCGAG CTTGGCTTTT TAAGGGATAC
AGCCTCTTTC ATCTTCATCA GGATGATAAG GCGCTTGAAT GCTTTGATCG GGTTATAAAG
GAAGATAGAA AACAACTGCG AGCAATTATT TATAAAGGGT ACTGTTTAAA AAATCTGAAG
CGTTACAAAG AAGCAGGGAA TGCCTTTGAT AATGCAATCC AGCTCAGTCC GAGAGATCTG
AATCTTCGAC TGAACAGGGG AATCTGCCTC TTTGAAGATA AGCAATTTTA TGAAGCACTA
AATGCTTTCG ATAAAGTATT GGAACTTGAT AAAAGAAATT TATCTGCATG GCTATACAAA
ATTCGCAGCC TTATCAGAAT GGAACGGATT CAGGAAGCTT TTCAAAGTTC AGGTAAACTT
TTAGAGATTC AGCCTCGCGA AGTCAGCGTA TGGCTTGCAC GAGCTGATCT TTTATTAAAG
ATGAAAAAAG TTGAAGAAGC TCTAGATGCA ACAAAGAAGA GTCTTCTTCT TGATAAATGG
AATCCTGACA CCTGGAGTCT ACGAGGATTG TGTTTTTATA AACTTGGTAA ATTCAATGAG
GCTTTACAAT GCTATGATAA TGCCTTAAAG ATTAATCCAA AACACCTAGA TGCGATGAAA
AATAGGGCAT TGTGCCTACA TAAACTGAAA CGTCATAGCG ATGCTCTGGA ATATTATGAA
CACGCTATCG CCGGAAATCC GCATAATATT GAAGCATGGT TCAACCGCGG ACTAATCCTC
CATAAAGCGA AAAATTACGA CGAAGCCCTT CATTCATATG ATAAAGTGAT AGAACTTGAT
AAATTCCATG CAAAAGCATA TTTCAACAAA GGTCTGATTC ACCGTCAGCT CGAACAATAT
TTTGAAGCAT TACAGGCATT TTCACAAGCC ACGAGTGTTG ATCCCTCATT TGCATCAGCA
TGGTATCACA TGGGTCTGAT ATATACAGAC CTCGTCAGAC ATAAAGAAGC TCTGCAATGC
TATGATAAGA CTCTGAAGCT AAATCCAAAA CATATCGGTG CTCTCCTGAA TAAAGGAGTA
ATTCTTGAAG ATGCCGGGCT GAAAAAAGAA GCTTTTATGT GCTTTCAGAA AGCCGCAAAT
CTGGATACAA AAATTGCAGC TTCCATAAAA GGAAGACTTG CACACTAA
|
|---|
| Protein sequence | MSDEDPIKIL QVRFAKGEIS AEQYEQMLSF LIRDVSSFKQ TETKEKPDII ETPLEQETTP
TVEPEKPEFA DDAEAEEIAV IEPDSTLTEP ERTTVKEIAT AIANAEEPVS SDTESLGIEV
TEETETNESE EVPAGEEDFA AGTVLDTSIS DEQIEAIEIS EEIPEEVTEK KESAERFLSQ
EDLGNVCYVT AVNLVQAGEF EKAYPFIEKS LTIQPELTLS WLYKGFIHHN RKEYEEAITC
FDKVLAKDPF QIRAWLFKGY SLFHLHQDDK ALECFDRVIK EDRKQLRAII YKGYCLKNLK
RYKEAGNAFD NAIQLSPRDL NLRLNRGICL FEDKQFYEAL NAFDKVLELD KRNLSAWLYK
IRSLIRMERI QEAFQSSGKL LEIQPREVSV WLARADLLLK MKKVEEALDA TKKSLLLDKW
NPDTWSLRGL CFYKLGKFNE ALQCYDNALK INPKHLDAMK NRALCLHKLK RHSDALEYYE
HAIAGNPHNI EAWFNRGLIL HKAKNYDEAL HSYDKVIELD KFHAKAYFNK GLIHRQLEQY
FEALQAFSQA TSVDPSFASA WYHMGLIYTD LVRHKEALQC YDKTLKLNPK HIGALLNKGV
ILEDAGLKKE AFMCFQKAAN LDTKIAASIK GRLAH
|
|---|
| |