| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mhun_0051 |
|---|
| Symbol | |
|---|
| ID | 3924865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanospirillum hungatei JF-1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007796 |
|---|
| Strand | + |
|---|
| Start bp | 68669 |
|---|
| End bp | 70489 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637895703 |
|---|
| Product | DNA-directed RNA polymerase subunit B' |
|---|
| Protein accession | YP_501548 |
|---|
| Protein GI | 88601370 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR03670] DNA-directed RNA polymerase subunit B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.620898 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCCA CACAGTCAAG AGTGTTCGTT GATGGAGCAC TTATCGGTCT GGTAGATGAT
CCGAAAGCTC TTGTAACTCA AATTCGTGCC TTGAGGAGGC AGGGTGTCAT CTCTACCGAG
GTAAACTGCT CGTACAAGGA GTTTAACGGC GATATTATCA TTCACACCGA TCGCGGGCGG
GCACGGCGAC CTCTTATTGT GCTTGAAAAT GGCGTCCCGA CCATTCCTGA AGAGGAAATT
CAAAAACTGA AAAATAAAGA GATAGAGTTT GTTGATCTTA TCAAAAAGGG ATATATTGAA
CTGATTGATG CAGAAGAGGA AGAAGACCTG AATATTGCAA TCAAACCAGA GAATATCACT
CCTGAACACA CTCATCTTGA GGTAGATCCC TCTCTCATCC TCGGTATCGG GGCAGCTCAT
GTACCATTCC CTGAGCACAA TGCATCTCCC CGTGTTACCA TGGGAGCCGG AATGGTCAAG
CAGGCACTGG GATTTGGTTG TGCAAATATG AAGCTCCGAC CTGATACCCG TGGTCACCTT
CTCCACTATG TTCAAAAACC TCTGGTATAT ACGCAGACTT CTGATGTTAT CGGTTCAGAT
GACCGGGCTG CAGGTCAGAA CTTTGTTGTT GCAATCCTCT CCTATGAAGG CTATAACATT
GAAGATGCCC TGATCTTCAA CAAGGCATCA ATCGACCGTG GTGTCGGACG TTCACACTTT
TTCAGAACAT ATGAAGGAGA AGAACGCCGG TATCCTGGTG GTCAGATTGA CCGTATTGAG
GTCCCTGACG AAGACGTGAC AGGAGCACAT GGATCTGATT ATTATGCCAA CCTTGACGAT
GATGGTATCA TCAATCCAGA AACCATTGTC AAAGAGAAGG ATGTCATTAT CGGAAAGACT
TCTCCGCCGC GTTTCCTTGA AGAACCAACG TCTGAGCTGA TTACCGTAGA AAAGCGCCGT
GATACCTCCG TGACCATGCG TTCCAACGAG CATGGTATTG TTGACACTGT TATTCTGACC
GAAGGAGAGA ACAACTCCAA ACTGGTCAAG GTCAGAACCC GTGATCTCCG TATTCCGGAA
GTTGGAGACA AATTCGCATC ACGACACGGG CAGAAAGGAG TCGTAGGGCT TATCACTCCG
AGTGTTGACA TGCCGTTCAC CGCGGGCGGT CTGACTCCTG ACCTGGTCAT TAATCCTCAT
GCAATTCCGT CACGAATGAC TATCGGTCAC ATGCTTGAAA TGCTTGGTGG GAAGGTCGGC
TCTCTTGAAG GACGTCGTAT TGCTGGTACA GCTTTTTCCG GAGAACGTGA AGAGGATCTT
CGTGCATCAC TGAAAAAGTT CGGGTTCTCA CACACCGGTC GTGAAGCCAT GTGGGACGGT
ATCACCGGAA GACGATTCCT TGCAGATATC TACGTCGGTG TCATCTATTA CCAGAAACTC
TATCATATGG TCTCATCCAA GATGCATGCC CGTTCCAGAG GTCCGGTCCA GGTTCTGACC
AGACAGCCGA CTGAAGGTCG TGCCCGTGAA GGAGGTCTGC GTTTCGGAGA GATGGAGCGT
GATGTTATGA TCGGTCATGG AGCAGCCATG GCCCTGAAAG AACGTCTGCT TGAAGAGTCC
GACAAGGTCA CCGAGTATGT GTGTGCACGG TGTGGTATGG TTGCCATGCT GGACCGGAAA
CAGAATATTA CCCGATGTCT CAATTGTGGC AGCGAGACTG ATATCTACCC GGTTGAGATG
TCGTATGCAT TCAAATTACT CCTTGATGAG ATGAAGAGTA TGACCATTGC TCCCCGTCTC
AACCTCGAGG ATGTTGTATA A
|
|---|
| Protein sequence | MISTQSRVFV DGALIGLVDD PKALVTQIRA LRRQGVISTE VNCSYKEFNG DIIIHTDRGR
ARRPLIVLEN GVPTIPEEEI QKLKNKEIEF VDLIKKGYIE LIDAEEEEDL NIAIKPENIT
PEHTHLEVDP SLILGIGAAH VPFPEHNASP RVTMGAGMVK QALGFGCANM KLRPDTRGHL
LHYVQKPLVY TQTSDVIGSD DRAAGQNFVV AILSYEGYNI EDALIFNKAS IDRGVGRSHF
FRTYEGEERR YPGGQIDRIE VPDEDVTGAH GSDYYANLDD DGIINPETIV KEKDVIIGKT
SPPRFLEEPT SELITVEKRR DTSVTMRSNE HGIVDTVILT EGENNSKLVK VRTRDLRIPE
VGDKFASRHG QKGVVGLITP SVDMPFTAGG LTPDLVINPH AIPSRMTIGH MLEMLGGKVG
SLEGRRIAGT AFSGEREEDL RASLKKFGFS HTGREAMWDG ITGRRFLADI YVGVIYYQKL
YHMVSSKMHA RSRGPVQVLT RQPTEGRARE GGLRFGEMER DVMIGHGAAM ALKERLLEES
DKVTEYVCAR CGMVAMLDRK QNITRCLNCG SETDIYPVEM SYAFKLLLDE MKSMTIAPRL
NLEDVV
|
|---|
| |