Gene Mflv_3544 details

Gene Information

• Locus tag: Mflv_3544
• Symbol: lysS
• ID: 4974862
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Mycobacterium gilvum PYR-GCK
• Kingdom: Bacteria
• Replicon accession: NC_009338
• Strand: +
• Start bp: 3776598
• End bp: 3779903
• Gene Length: 3306 bp
• Protein Length: 1101 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 640457768
• Product: lysyl-tRNA synthetase
• Protein accession: YP_001134806
• Protein GI: 145224128
• COG category: [J] Translation, ribosomal structure and biogenesis; [S] Function unknown
• COG ID: [COG1190] Lysyl-tRNA synthetase (class II); [COG2898] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 0.899884
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCGCAA CCCGCCTCGT CAGGGCGCAT CCCGAGTCCA GTCACCGGTG GGTGCCCGCG 
GCGGCCGGCT GGATCGTGGG TGTGATCGCC ACGTTGTCCC TGCTGGCGAG CGTGTCACCG 
CTGGTCCGCT CGATCATCCG CGTTCCCCGC GAGTTCGTCG ACGACTACAT CTTCAACTTC 
CCGGACACGA GCTTCGCGTG GGCGTTCGTG CTGGCGCTGC TCGCGGCCGC GCTCGCTGCC 
CGCAAACGCA TCGCCTGGTG GATCCTGACC GGCTACATGG TGGCCGCGGC CGTCTGGAAC 
GTCACCGGAC TGCTCGACGG TGACCGGTGG TTCGAGGACG TCGGCGAGAT CATCGGCCTG 
GGCTTCCACC TTGCCGCCAT CGCGTCGCTG CTGTTGGCCC GCAGGGAATT CTGGGCCCGG 
GTGCGCCCGG GCGCGCTCGT CAAGGCGGCA GTCACCCTGG TCGCGGGCCT GGGCGTCGGC 
ACGCTGATCG GCTGGGGTCT GCTCGAACTG TTCCCCGGCA CCCTGGCCCG GCCTGATCGC 
TTCTGGTACG CGCTCAACCG GGTCGGCGCC TTCGCGGGGG CGGATGCCGG CGCGTTCTCT 
GGCCACCCGC ACGTGCTGGT CAACGCCCTC CTCGGCCTGT TCGGCGCGAT GGCCCTGATG 
ATCGCGGCGG TCGTGCTGTT CCAGTCACAG CGTGCGGACA ACGCGCTGAC CGGTGAGGAC 
GAATCCGCCA TCCGGGGTCT GCTGGAGCTG TACGGGAAGA ACGATTCGCT GGGCTATTTC 
GCGACGCGTC GCGACAAGGC GGTGGTCTTC GCTCCGAACG GACGGGCCGC GATCACCTAC 
CGGGTCGAGG TCGGCGTGTG CCTGGCCAGC GGCGACCCGG TCGGCGACCC GAAGGCGTGG 
CCGCAGGCCA TCGAGGCGTG GCTGACGTTG TGTGAGACCT ACGGGTGGGC GCCGGGTGTC 
ATGGGCGCCA GCGCGACCGG CGCACAGGCG TTCCGCCAGG CGGGCCTGCA CGCGCTGCAA 
CTCGGCGACG AAGCGATCCT GCATCCGGAC GATTTCCGTC TCTCCGGACC CGAGATGCGC 
GCGGTGCGCC AAGCCGTCAC CCGCGCTCGA CGCGCCGGCG TCGCCGTGCG CTTCCGCAGA 
CACCGCGAGT TGTCACCCGA CGAGATGGCC GAGGTGATCG CGCACGCCGA CGCCTGGCGT 
GACACCGAGG ACGAGCGCGG ATTCTCGATG GCGCTGGGCC GGCTCGGTGA CCCCGCCGAC 
GCCGACTGCC TCCTGGTGGA GGCCGTACAG AACGGGACCC AGGTCGTCGC GATGCTGTCG 
CTGGTGCCGT GGGGCAGCAA CGGTGTGTCA CTGGACCTGA TGCGGCGTGC CCCCCAATCC 
CCCAACGGCA CCATCGAATT GATGGTCAGC GAGCTGTGCC TGCAGTCCGA GAGCATCGGC 
ATCAGCCGGA TCTCGCTGAA CTTCGCGATG TTCCGCTCGG CGTTCGAGCA GGGCGCACAG 
CTCGGGGCCG GCCCGGTGGC CCGGCTGTGG CGGTGGCTGC TCGTCTTCTT CTCCCGCTGG 
TGGCAGCTGG AGACGCTGTA CCGCTCCAAC ATGAAGTACC AGCCCGAGTG GGTGCCCCGC 
TATGCGTGTT ACGAGGACGC CCGGCTGGTG CCCAGGGTCG GGGTCGCCTC GGTCATCGCC 
GAAGGCTTTC TGGTGCTTCC CTTCTCGCGG CGCCACGATC AACCCCACAC GGGGCACCAC 
ATCGCCGCAC CGGGCGACCT GATCGCCACC GGACGCCTGC ACAGCGACGG AACGGCACCC 
GACCGCATCG GGCCCGTGGG CGACGGGGCC GACGACGACG CCGCCCCGCG CCTGCCCGAG 
CAGGTCCGGG TGCGGATGGC GAAGCTCAGC GCCCTGCAGG ACCGGGGCGT CGACGCCTAC 
CCCGTGGGCA GCCCGCCCAG CCACACCATC GCCGAGGCGA TCGCCGCCGA GGAAGGCACC 
GAGGTCACGG TGTCCGGCCG GGTTCTGCGG GCCCGCGACT ACGGTGGTGT GCTCTTCGGT 
CAGCTACGCG ACTGGTCCGC CGAAACCCAG GTGGCGCTGG ACAATTCGGC GCTGCTCGAC 
GGAACCACCA CCGACTTCAC CCGCACCGTC GACCTCGGCG ACCTGATCGA GGTGACCGGC 
ACGATGGGCC ACACCCGGTC GGGTTCGTGG TCGGTGCTGG TGACCCGGTG GCGGTTGATC 
GGCAAGTGCC TGCGGCCGCT GCCCGACAAG TGGAAGGGGT TGACCGACCA GGAGGCGCGG 
GTGCGCGCCC GCTACGTCGA CCTCGCGGTC AACACCGACG CCCGCGAACT CATCAAGGCC 
CGCAGCGCCA TTCTGCACGC CATCCGCGAA ACCCTGGTCG GCAAAGGCTT TCTCGAGGTC 
GAGACGCCGA TCCTGCAGCA GATCCACGGC GGCGCCAACG CGCGTCCGTT CCTGACCCAC 
ATCAACGCCT ACGACCTGGA CCTGTATCTG CGGATCGCAC CCGAGTTGTA TCTGAAGAGG 
CTCTGTGTCG GGGGCGTCGA GCGGGTCTTC GAGCTGGGCC GGGCGTTCCG GAACGAGGGG 
GTCGACTTCA GCCACAATCC CGAATTCACC CTGCTGGAGG CCTACCAGGC GCACGCGGAC 
TACACCGTGT GGATCGACGG GTGCCGCGAG CTGATCCAGA ACGCGGCCAT GGCCGCCAAC 
GGCTCCCACG TGTTCTTCCG TCCGCGCGAG GACGGGGTCC TCGAACCGGT CGACATCTCC 
GGCCGATGGG CGGTCAAGAC GGTTCACGGC GCGGTGTCGG AGGCACTCGG CGAGCACATC 
GACGTCGACA CCGACCTGGC GACGCTGCGC CGCCTCTGCG ACAAGGCCGG CATCCCCTAC 
CTGACGCACT GGGACGCCGG CGCGGTGGTC CTCGAGATGT ACGAGCACCT CGTCGAGGAC 
CAGACCACCG AACCCACCTT CTACAAGGAC TTCCCGACGT CCGTGTCGCC GCTGACCCGG 
CCGCACCGCA GCATCCCGGG GGTCGCCGAA CGCTGGGACC TCGTCGCGTG GGGGGTCGAG 
CTCGGCACCG CCTACAGCGA ACTGACCGAC CCTGTGGAGC AGCGCCGCAG GTTGCAGGAG 
CAGTCGCTGC TGGCCGCAGG CGGCGACCCG GAGGCGATGG AGCTCGACGA GGACTTCCTG 
CAGGCGATGG AGTACGCGAT GCCTCCGACC GGAGGCCTCG GAATGGGTGT CGATCGGGTG 
GTCATGCTGA TCACCGGGCG CAGCATCCGC GAGACGCTGC CGTTCCCGCT CGCGAAACCG 
AGGTAG 

 

Protein sequence

MTATRLVRAH PESSHRWVPA AAGWIVGVIA TLSLLASVSP LVRSIIRVPR EFVDDYIFNF 
PDTSFAWAFV LALLAAALAA RKRIAWWILT GYMVAAAVWN VTGLLDGDRW FEDVGEIIGL 
GFHLAAIASL LLARREFWAR VRPGALVKAA VTLVAGLGVG TLIGWGLLEL FPGTLARPDR 
FWYALNRVGA FAGADAGAFS GHPHVLVNAL LGLFGAMALM IAAVVLFQSQ RADNALTGED 
ESAIRGLLEL YGKNDSLGYF ATRRDKAVVF APNGRAAITY RVEVGVCLAS GDPVGDPKAW 
PQAIEAWLTL CETYGWAPGV MGASATGAQA FRQAGLHALQ LGDEAILHPD DFRLSGPEMR 
AVRQAVTRAR RAGVAVRFRR HRELSPDEMA EVIAHADAWR DTEDERGFSM ALGRLGDPAD 
ADCLLVEAVQ NGTQVVAMLS LVPWGSNGVS LDLMRRAPQS PNGTIELMVS ELCLQSESIG 
ISRISLNFAM FRSAFEQGAQ LGAGPVARLW RWLLVFFSRW WQLETLYRSN MKYQPEWVPR 
YACYEDARLV PRVGVASVIA EGFLVLPFSR RHDQPHTGHH IAAPGDLIAT GRLHSDGTAP 
DRIGPVGDGA DDDAAPRLPE QVRVRMAKLS ALQDRGVDAY PVGSPPSHTI AEAIAAEEGT 
EVTVSGRVLR ARDYGGVLFG QLRDWSAETQ VALDNSALLD GTTTDFTRTV DLGDLIEVTG 
TMGHTRSGSW SVLVTRWRLI GKCLRPLPDK WKGLTDQEAR VRARYVDLAV NTDARELIKA 
RSAILHAIRE TLVGKGFLEV ETPILQQIHG GANARPFLTH INAYDLDLYL RIAPELYLKR 
LCVGGVERVF ELGRAFRNEG VDFSHNPEFT LLEAYQAHAD YTVWIDGCRE LIQNAAMAAN 
GSHVFFRPRE DGVLEPVDIS GRWAVKTVHG AVSEALGEHI DVDTDLATLR RLCDKAGIPY 
LTHWDAGAVV LEMYEHLVED QTTEPTFYKD FPTSVSPLTR PHRSIPGVAE RWDLVAWGVE 
LGTAYSELTD PVEQRRRLQE QSLLAAGGDP EAMELDEDFL QAMEYAMPPT GGLGMGVDRV 
VMLITGRSIR ETLPFPLAKP R