Gene Mfla_0142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMfla_0142 
Symbol 
ID3999519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacillus flagellatus KT 
KingdomBacteria 
Replicon accessionNC_007947 
Strand
Start bp151989 
End bp153455 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content55% 
IMG OID637937033 
Productsigma-54 (RpoN) 
Protein accessionYP_544254 
Protein GI91774498 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.887492 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAAA GTCTACAGCT AAAATTTTCC CAAAATCTCG CATTGACGCC GCAGCTGCAG 
CAGTCAATCA AATTGTTGCA GCTGTCCTCG CAGGAACTCA ACCAGGAGCT GGAGTCACTG
TTGCAGGCCA ATCCCTTGCT GGAGCGTATA GACGGTCCAG ACGGTGCTGC CGAGATATCC
GAAAGCTACA GTCCTGCCCC GGATGCTGCG GTTTCTGCTC CTGCCAGCGA AGCGCCTGCG
CCCGCGAGCG AGGAATTGCC ACGCATTGAC GAATTTGGCG GCGGGGATGA TTACTATGAG
TCTTTCCAAG GAGGTAGCCG CTGGGAAGAA GGCGGCGCTA ATAGTGAAGA CGATAACGAC
TTCAGCTTTC AGGAAGCGGC CAACCTCACT CTGCGTGAAC ACCTGCTGAG CCAGATCAAG
CTGCTGCCTT TGTCGGAACG TGATCAGACC TTGGCGATGG TACTGGTAGA TGCGATCAAT
GACGATGGGT ATCTGGAACA GTCCCTGGAA GAGCTGGCCG AGCTTTTGCC GGAAGAGCTG
GAGATCGATC CGCTCGAGCT TGAAACGGCA CTCAAGCATA TCCAGAATCT GGATCCGCCG
GGGATTGGCG CCCGCAACCT GGCAGAATGC CTGACATTGC AACTGCGTGC CTTGCCGGCA
GAAACACCTT TTGTGGAGTT GGCGATCAAG GTTGCCGAAC AGCATCTGCC CCTGCTGGCA
AGTCGTGATT ACACGCGCTT GCGTAAACTG CTGCATTGCG ATGATGATGT CCTGAAATCG
GTGCAGCAAC TGGTGACCCA GCTCAATCCG CGACCAGGCG GCGAATTCAG CCACATTACT
TCGGATCATT ACATCCAGCA TGAAATCGTG GTGAAGAAGA TCAAGGGGAT CTGGGTTGCC
AGCCTGAATG ATGAGGTCGT ACCCAAGCTG CGTATCAACC AGCTTTATGC CGGCATCCTG
AAACGGAATC GTGACAGCTC CAGTCAATAT CTCATGAGTC AGATGCAGGA GGCGAAATGG
ATGATCAAGA ATATCCAGCA GCGCTTCTCC ACTATCCTGC GTGTGTCGCA GGCAATCGTG
GACCGGCAGC GTAATTTCTT CGAGCACGGC GAAGTGGCCA TGCGCCCGTT GGTGCTTCGG
GAGATTGCCG ATGAGCTGGG CCTGCATGAA TCGACCGTGT CGCGCGTGAC CACAAGAAAG
CACATGCTCA CACCGCGCGG TGTTTACGAG TTGAAGTATT TCTTCGGCAG CCATGTGGCG
ACAGAGTCGG GAGGAGCGTG CTCCGCCACG GCGATCCGTG CGTTGATCAA GCAGATGGTG
AGCGAGGAAA ACCCGAAGAA GCCGCTGTCC GACAATCAGA TCACCGATAT CCTGAGCAAG
CAAGGGATTG TCGTGGCAAG AAGAACTATA GCGAAATACC GCGAGTCTCT ACAGATACCC
GCGGCCAACC AGCGCAAGTC GCTTTGA
 
Protein sequence
MKQSLQLKFS QNLALTPQLQ QSIKLLQLSS QELNQELESL LQANPLLERI DGPDGAAEIS 
ESYSPAPDAA VSAPASEAPA PASEELPRID EFGGGDDYYE SFQGGSRWEE GGANSEDDND
FSFQEAANLT LREHLLSQIK LLPLSERDQT LAMVLVDAIN DDGYLEQSLE ELAELLPEEL
EIDPLELETA LKHIQNLDPP GIGARNLAEC LTLQLRALPA ETPFVELAIK VAEQHLPLLA
SRDYTRLRKL LHCDDDVLKS VQQLVTQLNP RPGGEFSHIT SDHYIQHEIV VKKIKGIWVA
SLNDEVVPKL RINQLYAGIL KRNRDSSSQY LMSQMQEAKW MIKNIQQRFS TILRVSQAIV
DRQRNFFEHG EVAMRPLVLR EIADELGLHE STVSRVTTRK HMLTPRGVYE LKYFFGSHVA
TESGGACSAT AIRALIKQMV SEENPKKPLS DNQITDILSK QGIVVARRTI AKYRESLQIP
AANQRKSL