Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_4403 |
Symbol | |
ID | 5830937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | + |
Start bp | 4898413 |
End bp | 4900392 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641370196 |
Product | choline/carnitine/betaine transporter |
Protein accession | YP_001641842 |
Protein GI | 163853799 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGATC TCAACGACCG GCGCCCTCTC GGTCGACGCG GCCCGAGGAT GCAGGTTAAT CCGCCGGTCT TCTTCACCTC GGCCGGGCTG ACGCTCGCCT TCGCCGGTCT CAGCGCGCTG TTTCCCGCAC AGGCCAAGTC GATCTTCGAC AGCCTACAAG CCGCGATCGT GCACGAATTC GGCTGGTTCT ACATCGCCGT CGTCGCCGGC TTTCTCGGCT TCGCGATCTT CCTGATGCTG AGCCGCTACG GCGACGTGAA GCTGGGGCCG GACGACAGCG AGCCCGACTA CAGCTACCTG TCGTGGTTCG CGATGCTGTT CAGCGCCGGC ATGGGCATCG GCCTGATCTT CTTCGGTGTG GCCGAGCCGC TTCAGCACTA TGCCACGCCC CCCGTCGGCG AGGGCAAGAC CATCGAGGCT GCGCAGCGGG CGATGGTGCT GACCTTCTTC CACTGGGGGG TGCATGCCTG GGCGATTTAC ATCGTCGTGG GGCTGGCGCT GGCCTATTTC GCATTCCGCC GCGGGCTGCC GCTGACGGTG CGCTCGGCCC TCCACCCTCT CATCGGCGAC CGGATCAACG GTCCGATCGG GCACGCGATC GACATCTTCG CGGTGCTCGG CACGATCTTT GGCGTCGCGA CCTCGCTCGG GCTCGGCGTG CTTCAGGTCA ATGCCGGTTT CACCCACCTG TTCGGCGTAC CGAACAACAC CTTCGTACAG ATCATCCTGA TCGCCGCCAT TACCGGCTGC GCCACGCTCT CGGTCGCCTC GGGGCTCGAC AAGGGCGTGA AGGTCCTGTC CGAACTGAAC ATCATCCTGG CCGTCGTGCT GCTCGCCTTC GTGCTGATCA CCGGCTCGAC GGTGTTCCTG CTCCAGGCCT TCGTTCAGAA TCTCGGCGCT TATCTCGGGG CTGTGGTCGA GCGCACGCTC CAGACCTACG CCTACAAGCC CAATGAATGG CTCGGCAGTT GGACGCTGTT CTACTGGGGC TGGTGGATCG CGTGGTCGCC CTTCGTCGGC ATGTTCATCG CCCGGATCTC GCGCGGGCGC ACCATCCGCG AATTCGTCAC CGGCGTGCTG CTGGTGCCGG TGCTGTTCAC GTTCTTCTGG ATGACCGTGT TCGGTAACAC GGCCATCGAG ATGGATCGCG CCGGCGCAGT GCCGCTCGCG CAGATCGTCA AGGACAACAT GCCGGTCGCC CTGTTCGAGA TGCTCGGGCA CCTGCCGTTC GGCATGATCG CCTCGGGACT GGCGACGCTG CTCGTGATCT TCTTCTTCGT CACCTCGGCG GATTCCGGAG CGCTGGTGAT CGACATGATC ACCTCGGGCG CGGCCGACAA CCCGCCGCTC TGGCAGCGGG TGTTCTGGGC GGTCAGCAGC GGCGCCATCG CCGCCGTGCT GCTGGTGGCG GGCGGGCTTG AGGCGCTCCA GACGGCGGCG ATCGCCAGCG CCCTGCCCTT CTCCATCGTG ATGATCTTCA TCTGCTACGG CCTGCTCCGG GCCCTCCAAC TGGAGGGGCG TGCCGGCGGC CTCGACCTGT CCTCGGCCGC CGCCGGGCCG TCGGGCGGCC TGTCCTGGCA GGAGCGGCTG GCGGCGATCA CCCACTCCTA CCGGAAGGAA GACCTCAAGA CCTTCCTCGA CGAGACGGTC GCGCCCGCCC TCGAAGCGGT GGCCGGGCAG ATGCGCGAGA GCGGCTTGTC GCCCGAGGTC GTGCGGTCGG CCGAGCGCAT CGATCTGATC GTTCCCTACG GGGACCGTGG CGCCTTCCGC TACGGCATCC GCGTGCGCGG ATTGCGGAAT CCGAGCTTCG CCTGGGCCGA GAATCCGTCG AAGTCGTCGG ATGAGCGCCA TTATCGCGCC CTCGTTCAGA CCTCCGAGGG CGACCGCCCG CACGACGTCA CCGGCTACGG CCGGGATCGA GTCATCGACG ATCTCCTGAA GCGCTATGCA CAGTTCCGGG CGGTCCGGGG CGCTGCCTGA
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Protein sequence | MNDLNDRRPL GRRGPRMQVN PPVFFTSAGL TLAFAGLSAL FPAQAKSIFD SLQAAIVHEF GWFYIAVVAG FLGFAIFLML SRYGDVKLGP DDSEPDYSYL SWFAMLFSAG MGIGLIFFGV AEPLQHYATP PVGEGKTIEA AQRAMVLTFF HWGVHAWAIY IVVGLALAYF AFRRGLPLTV RSALHPLIGD RINGPIGHAI DIFAVLGTIF GVATSLGLGV LQVNAGFTHL FGVPNNTFVQ IILIAAITGC ATLSVASGLD KGVKVLSELN IILAVVLLAF VLITGSTVFL LQAFVQNLGA YLGAVVERTL QTYAYKPNEW LGSWTLFYWG WWIAWSPFVG MFIARISRGR TIREFVTGVL LVPVLFTFFW MTVFGNTAIE MDRAGAVPLA QIVKDNMPVA LFEMLGHLPF GMIASGLATL LVIFFFVTSA DSGALVIDMI TSGAADNPPL WQRVFWAVSS GAIAAVLLVA GGLEALQTAA IASALPFSIV MIFICYGLLR ALQLEGRAGG LDLSSAAAGP SGGLSWQERL AAITHSYRKE DLKTFLDETV APALEAVAGQ MRESGLSPEV VRSAERIDLI VPYGDRGAFR YGIRVRGLRN PSFAWAENPS KSSDERHYRA LVQTSEGDRP HDVTGYGRDR VIDDLLKRYA QFRAVRGAA
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