Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_4088 |
Symbol | |
ID | 5831736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | - |
Start bp | 4547558 |
End bp | 4548931 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641369879 |
Product | sigma-54 factor interaction domain-containing protein |
Protein accession | YP_001641529 |
Protein GI | 163853486 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0065577 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.672706 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGGCTGC TCATCGTCGG ACGGCTCTCG AGCGAACTCG TCACCGCCTC GAAGATGGCC ATGAACCGGG GCGCCTCGGT CACCCACGCC GACGGGATCG ACCAGGGGCT CGCGACCCTG CGCGCCAAGG GCGGCGACCT CGTCATGGTC GATGTCGGGC TCGACATCCG CCGGCTGGTG CAGGCCCTGT CCGACGAGCG CATCCGCACG CCGGTGGTGG CCTGCGGCAT CGCCTCCGAC GCCCGCGCCG CGGTGGCGGC GATCCAGGCG GGCGCCAAGG AGTACATCCC CCTCCCCCCC GATCCCGAAT TGATCGCGGC GGTCCTGGAG GCCGTGGCGG CGGACGCCCG CAGTTTCATC TGGCGCGATC CGTCCATGGA GCGCGTGGTG CGGCTCGCCG AGCAGGTCGC CCGCTCGGAA GCCTCCGTGC TCATCACCGG CGAGAGCGGC ACCGGCAAGG AGGTGCTGGC CCGCCACGTC CACGCCAAGT CGAACCGGGC GGGCCGCCCG TTCGTCTCGG TCAACTGCGC GGCAATCCCT GAGGCCCTGC TCGAATCCGA GCTGTTCGGC CACGAGAAGG GCGCCTTCAC CGGCGCGGTC GCCCGGCGCA TCGGCCGGTT CGAGGAGGCC AATGGCGGCA CGCTGCTCCT CGACGAAATC TCCGAGATGG ACGTGCGGCT GCAATCCAAG CTGCTGCGCG CGCTGCAGGA GCGGGTGATC GACCGGGTCG GCGGAGCCGC CCCCGTCAAG GTGGATATCC GCGTGCTCGC CACCTCCAAC CGCAACCTCG CCGACGAGGT GAAGAAGGGC ACGTTCCGCG AGGATCTGTA CTACCGCCTC AACGTCGTGC ACCTGCGCCT GCCCGCCTTG CGCGAGCGGC TGGCCGACAT CCTCGAACTC ACCGCCCATT TCGCCCGCAA ATACGCGGAG CTGAACGGGC TGCCGCTGCG TCCGCTGGCC CGCGAGGCGC AGGCTCTGGT CGCCCGCAAC CCCTGGCCCG GCAACGTGCG CGAGTTGGAG AACACGATCC ACCGCGCGGT GCTCCTGGCG CAGGGGGCCG AGATCGGTCC GGAGGCGATC CTGAGCCCGG AGGGCGAATC GCTCGCGGCG CCGACGGCGG CCTCCGGCCC GGTCGAGCGG GCGGCGAGCG CGGCGGAGGC GGCCACCCGC GGGCTGGTCG GACGCACCGT GGCGGATGTC GAGCGCGACC TGATCCTCGA CACCCTCGAC CATTGCCTCG GCAACCGCAC CCACGCGGCG CGCATCCTCG GCATCTCGAT CCGGACACTG CGCAACAAGC TCAACGAGTA TGTCGAGGCC GGCGTGAAGG TGGCCGAGCC CGGCGGCGTC CGGGCCATGG CAGCCTATGG CTGA
|
Protein sequence | MRLLIVGRLS SELVTASKMA MNRGASVTHA DGIDQGLATL RAKGGDLVMV DVGLDIRRLV QALSDERIRT PVVACGIASD ARAAVAAIQA GAKEYIPLPP DPELIAAVLE AVAADARSFI WRDPSMERVV RLAEQVARSE ASVLITGESG TGKEVLARHV HAKSNRAGRP FVSVNCAAIP EALLESELFG HEKGAFTGAV ARRIGRFEEA NGGTLLLDEI SEMDVRLQSK LLRALQERVI DRVGGAAPVK VDIRVLATSN RNLADEVKKG TFREDLYYRL NVVHLRLPAL RERLADILEL TAHFARKYAE LNGLPLRPLA REAQALVARN PWPGNVRELE NTIHRAVLLA QGAEIGPEAI LSPEGESLAA PTAASGPVER AASAAEAATR GLVGRTVADV ERDLILDTLD HCLGNRTHAA RILGISIRTL RNKLNEYVEA GVKVAEPGGV RAMAAYG
|
| |