| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3905 |
|---|
| Symbol | |
|---|
| ID | 5834788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 4341250 |
|---|
| End bp | 4342107 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641369696 |
|---|
| Product | aminotransferase class IV |
|---|
| Protein accession | YP_001641347 |
|---|
| Protein GI | 163853304 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0129654 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.244879 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTGGT CTAACGGGCG GCTGGTCGAG GGCGGCACCC TCCCCTTCGC CATGGGGGAT
CGTGGCCTGC TGCTCGGCGA CGGCGTGTTC GACACCGCCC TGGCGATTCA GGGACAGGTC
GCCTTCGAAG CCGCCCATGT TGATCGCCTC GCCGCCGCCG CGGAAGCGCT CGGCTTCGCG
ATTGCGCGGG AACGGATCGT CGAAGCGATG CGCGCGCTAG CCAGCACCGC GCCGCTCGCG
GCGATCCGCA CCACGTTGAC CCGCGGCCCC GGTCCGCGCG GGCTGGCGCC CCCGCCCGAG
CCGAACCCGT TCCTGTTCGG CAGCGCCGCC CCAGCCCGCG CCGCCCTGTT CTTCGCGCCC
TTGCGGCTGG CGCTCACGGA GATCGCCCGC AACGAGACCT CGCCGGCCGC GCGCCTCAAG
ACCCTCGGCT ATCTCGACGC GGTGCTCGCC GCCCGCGCGG CGCAGGCACA AGGCTTCGAT
GAGGCTCTGT TCCTGAACAC GCGGGGCCGC GTCGCCTGCG CCGGCACCGG CAATGTCTTT
GCGGTTTTCG GAGGGACGCT CGTCACGCCG CCGCTGGAGG ATGGCGTCCT GCCGGGCATC
ATTCGGGCCG AGCTTGTTGC CAGGATCGCG CCGAGCCTCG GCATCGCGGT CGAAGAACGC
CCTCTCCTGC CCTCGGAGCT GGCGGCGGCG GAGGCGCTGT TCGTCACCAA CTCGCTGCGC
CTGCTCGCCC CCGTGACCGC GCTCGGTGCG CAGCCCTATG ACAGCGCCGG GCACGGGACG
GTTCGCAGCC TCTACGCGGC TTTGCGGGAA ACCGTGGCGG CGGAGTGCGG CGTCGAGGTG
GACGCCCTCG ACCCGTGA
|
|---|
| Protein sequence | MLWSNGRLVE GGTLPFAMGD RGLLLGDGVF DTALAIQGQV AFEAAHVDRL AAAAEALGFA
IARERIVEAM RALASTAPLA AIRTTLTRGP GPRGLAPPPE PNPFLFGSAA PARAALFFAP
LRLALTEIAR NETSPAARLK TLGYLDAVLA ARAAQAQGFD EALFLNTRGR VACAGTGNVF
AVFGGTLVTP PLEDGVLPGI IRAELVARIA PSLGIAVEER PLLPSELAAA EALFVTNSLR
LLAPVTALGA QPYDSAGHGT VRSLYAALRE TVAAECGVEV DALDP
|
|---|
| |