| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_3436 |
|---|
| Symbol | |
|---|
| ID | 5834102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 3814593 |
|---|
| End bp | 3816131 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641369235 |
|---|
| Product | phytoene desaturase |
|---|
| Protein accession | YP_001640893 |
|---|
| Protein GI | 163852850 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.240701 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG GTTCTTCGGT CGCGGTCGTC GGAAGCGGGC TCGGTGGGTT GGCCTCGGCC
TGCGTGGCGG CCGCGCGCGG CCATCGCGTC ACGGTCTACG ACAAGAACGA CTGGATGGGT
GGCAAGGCTG CGGTGCTGCA CGAGGGCGGC TTCCGCTTCG ATATGGGGCC GACCATCCTC
ACCGTGCCGC GCGTGCTGGA GCGCATCTTC GCCGAGGCCG GGCGCTCGGT GCACGATTAC
ATGGATCTGC GCCGCCTCGA CCCGCAATGG CGCTGCTTCT TCGATGACGG CTCGCGCGTC
GATCTGATCG AGGACGTCGA TGCCATGGCC GCTTCCATGG ACCGGTTCGC GCCCGGACAA
GGGGCGGGCG ACGGCTACAA GAAGTTCATC GCGGTCTCCG AACATCTGCA CGGCGTCTCC
GAGCGGTTCT TCTTCTGGAA GGCGGTGCAG GATCTGTTCG ACACGATCGA CCTGCGCGCC
AACATGAATC CCGGCACGCT CCGCGACGTG CTGAGCCTGC GCATGCACGC CACCGTCGCG
AGCACGATCC GCGGCAAGGT CAAGGATGCG CGCCTCGCGC AGATGCTCGA CCACTTCGTG
CAATATGTCG GCTCCTCGCC CTACGGCGCG CCGGCGGTGC TCTGCGCCAT CGCCCACATG
CAGACGGCCG AAGGCGTGTG GTACCCGATG GGCGGCACCC GCGCGGTGGC CGAGGGACTG
ATGCGGCTCG CCACCGAACT CGGCGCCACG ATGAAGCCTG CCGACGAGGT GCTGGGCCTC
GACATCGCCG CGGGCCAGCT CCGCGGCCTG CGCACCCGCG ACGGCATCAC GCCTTATGAT
GCCGTGATCT CCAACATGGA TTCGGTGCGC ACCTACCGCG AACTCGTCGG CGGCGAGGTC
GGCAAATCCT ACGAGAAGAA GTCTTTCGAG CCGGCCTGTT CCGGCGTGGT GCTCTATCTC
GGCCTGAACA AGCGCTACGA GCACTTGAAC CACCACGATT TCGTCTTCTC CCGCGACCCG
GAGGAGGAGT TCGACTTCAT CTACCGCAAG GGCGAGCCGG CCCCCGACCC GACCGCCTAT
CTCGCGGCCC CCTCCTCCAC CGATCCGAGC GTGGCGCCCG AGGGCGGCGA GGCACTCTAC
GTCCTCGTCC ACACGCCGTA TCTCCGGCCG CACCACGACT GGTCGAAGAT GTTCCCGGCC
TATCGCCGGA CGATCCTGGA GAAGCTCAAG CGCACCGGCG GCATGCCGGA TCTCGAGGAG
CGCATCGTCG TCGAGCGTCA CCTCACCCCG CAGGACATCC ACGACCGCTA CAAGGTGCTC
AACGGCGCGA TCTACGGGCT TGCCTCGCAC GGGCGGATGA TGGGCGCGTT CAAGCCCGGC
AACCGCTCGC GGGAGGTGCG TGGCCTCTAC CTCGCGGGCG GCGCCGCCCA TCCGGGGCCG
GGCATGCCGA TGGTGATGAT GTCGGGCTGG ATCGCGGCCG ACGCTCTCGA TCAGGATCTG
CGCGGCCGTG CAGAACCGGA GCTGCGCAAG ACCGCCTGA
|
|---|
| Protein sequence | MSQGSSVAVV GSGLGGLASA CVAAARGHRV TVYDKNDWMG GKAAVLHEGG FRFDMGPTIL
TVPRVLERIF AEAGRSVHDY MDLRRLDPQW RCFFDDGSRV DLIEDVDAMA ASMDRFAPGQ
GAGDGYKKFI AVSEHLHGVS ERFFFWKAVQ DLFDTIDLRA NMNPGTLRDV LSLRMHATVA
STIRGKVKDA RLAQMLDHFV QYVGSSPYGA PAVLCAIAHM QTAEGVWYPM GGTRAVAEGL
MRLATELGAT MKPADEVLGL DIAAGQLRGL RTRDGITPYD AVISNMDSVR TYRELVGGEV
GKSYEKKSFE PACSGVVLYL GLNKRYEHLN HHDFVFSRDP EEEFDFIYRK GEPAPDPTAY
LAAPSSTDPS VAPEGGEALY VLVHTPYLRP HHDWSKMFPA YRRTILEKLK RTGGMPDLEE
RIVVERHLTP QDIHDRYKVL NGAIYGLASH GRMMGAFKPG NRSREVRGLY LAGGAAHPGP
GMPMVMMSGW IAADALDQDL RGRAEPELRK TA
|
|---|
| |