| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2960 |
|---|
| Symbol | |
|---|
| ID | 5833424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 3306638 |
|---|
| End bp | 3308557 |
|---|
| Gene Length | 1920 bp |
|---|
| Protein Length | 639 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641368760 |
|---|
| Product | chaperone protein DnaK |
|---|
| Protein accession | YP_001640420 |
|---|
| Protein GI | 163852377 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0443] Molecular chaperone |
|---|
| TIGRFAM ID | [TIGR02350] chaperone protein DnaK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.1747 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAAG TGATCGGTAT CGACCTCGGC ACCACCAATT CCTGCGTGGC CGTCATGGAA
GGCACGCAGC CGCGGGTCAT CGAGAATGCG GAAGGCGCCC GCACCACCCC GTCCATCGTC
GCCTTCACCG ACGACGGGGA GCGCCTCGTC GGCCAGCCTG CCAAGCGGCA GGCGGTGACC
AATCCTGAGC GCACCTTCTT TGCGATCAAG CGTCTGATCG GCCGGACCTA CGACGATCCG
CTGACGCAGA AGGACAAGGG CCTCGTGCCC TACAAGATCG CCCGCGGCGA CAACGGCGAT
GCCTGGGTCG AGGCCGACGG CAAGAAGTAT TCGCCCTCGC AGATTTCCGC CTTCACCCTT
CAGAAGATGA AGGAGACGGC CGAGTCGCAT CTCGGCCAGC CGGTGACGCA GGCCGTCATC
ACGGTGCCCG CCTACTTCAA CGACGCCCAG CGTCAGGCCA CCAAGGATGC CGGCAAGATC
GCCGGCCTCG AAGTGCTGCG CATCATCAAC GAGCCGACGG CGGCGGCGCT CGCCTACGGC
CTCGACAAGA AGAAGGCCGG CACCATCGCG GTCTACGACC TCGGCGGCGG CACCTTCGAC
GTGTCGATCC TTGAGATCGG CGACGGCGTG TTCGAGGTGA AGTCGACGAA CGGCGACACC
TTCCTCGGTG GCGAGGACTT CGACAACCGC GTGGTCGAGT ACCTGACCGC CGAGTTCAAG
AAGGAGCAGG GCATCGACCT GACCAAGGAC AAGCTCGCCC TCCAGCGCCT CAAGGAGGCC
GCCGAGAAGG CGAAGATCGA GCTGTCCTCG GCGACCCAGA CCGAGATCAA CCTGCCCTAC
ATCACCGCCG ACGCCTCCGG GCCGAAGCAC CTCGCGCTCA AGCTCAGCCG CGCGAAGTTC
GAGTCGCTGG TTGATGACCT CGTCCAGCGC ACGATCGAGC CGTGCCGCAA GGCGCTCAAG
GATGCCGGCG TCTCGGCTTC CGAGATCGAC GAGGTCGTGC TCGTCGGCGG CCAGACCCGC
ATGCCCAAGG TGCAGGAGGT CGTGAAAGCG TTCTTCGGCA AGGAGCCCCA CAAGGGCGTC
AACCCGGACG AGGTCGTCGC CATCGGCGCC GCGGTCCAGG CCGGCGTGCT CCAGGGCGAC
GTGAAGGACG TGCTGCTCCT CGACGTGACC CCGCTCTCGC TCGGCATCGA GACGCTGGGC
GGCGTGTTCA CGCGGCTCAT CGACCGCAAC ACCACGATCC CGACCAAGAA GTCCCAGGTC
TTCTCCACGG CCGAGGACAA CCAGAACGCG GTCACCATCC GGGTCTTCCA GGGTGAGCGC
GAGATGGCGG CAGACAACAA GCTGCTCGGC CAGTTCGATC TCGTCGGCAT TCCGCCGGCG
CCCCGCGGCA TGCCGCAGAT CGAGGTGACC TTCGACATCG ACGCCAACGG CATCGTCAAC
GTGACGGCGA AGGACAAGGC GACGAACAAG GAGCACCAGA TCCGCATCCA GGCCTCCGGC
GGCCTGTCGG ACGCCGACAT CGAGAAGATG GTCAAGGACG CCGAGGCCAA TGCTGAGGCG
GACAAGAAGC GGCGCGAGCT GGTCGAGGTG AAGAACCAGG GCGAGAGCCT GATTCACGCC
ACCGAGAAGT CGGTGTCGGA ATACGGCGAC AAGGTCTCGG CCGCCGACAA GGGTGCCATC
GAGTCCGCCA TCACCGCGCT GCGCTCCGCG CTCGAGGGTG AGGACGCCGA GGGCATCAAG
GCCAAGACCA ACGACCTGAT GCAGGCCTCG ATGAAGCTCG GCGAGGCGAT GTACGCCGCC
TCGCAGACCG AGGGTGCGCC CGGCGCCGAC GGTGCCGCGT CCACGGACGA GAAGAAGGAC
GACGTCATCG ACGCCGACTT CCAGGAAGTG GACGAGAACG AGCGCAAGAA GCGCGCGTAA
|
|---|
| Protein sequence | MGKVIGIDLG TTNSCVAVME GTQPRVIENA EGARTTPSIV AFTDDGERLV GQPAKRQAVT
NPERTFFAIK RLIGRTYDDP LTQKDKGLVP YKIARGDNGD AWVEADGKKY SPSQISAFTL
QKMKETAESH LGQPVTQAVI TVPAYFNDAQ RQATKDAGKI AGLEVLRIIN EPTAAALAYG
LDKKKAGTIA VYDLGGGTFD VSILEIGDGV FEVKSTNGDT FLGGEDFDNR VVEYLTAEFK
KEQGIDLTKD KLALQRLKEA AEKAKIELSS ATQTEINLPY ITADASGPKH LALKLSRAKF
ESLVDDLVQR TIEPCRKALK DAGVSASEID EVVLVGGQTR MPKVQEVVKA FFGKEPHKGV
NPDEVVAIGA AVQAGVLQGD VKDVLLLDVT PLSLGIETLG GVFTRLIDRN TTIPTKKSQV
FSTAEDNQNA VTIRVFQGER EMAADNKLLG QFDLVGIPPA PRGMPQIEVT FDIDANGIVN
VTAKDKATNK EHQIRIQASG GLSDADIEKM VKDAEANAEA DKKRRELVEV KNQGESLIHA
TEKSVSEYGD KVSAADKGAI ESAITALRSA LEGEDAEGIK AKTNDLMQAS MKLGEAMYAA
SQTEGAPGAD GAASTDEKKD DVIDADFQEV DENERKKRA
|
|---|
| |