| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_2094 |
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| Symbol | |
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| ID | 5833184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | + |
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| Start bp | 2337184 |
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| End bp | 2339070 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641367892 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001639561 |
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| Protein GI | 163851518 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.386051 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0954493 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACTCG ACGTGCAACT CGACGCGCCC GCGCCGGCCG CCCCCGTGCC CGCCGCCGGC
CAAAGCTCGT ATCTCCAGAC CTTCGATCGC GTCTTCGGGC GGATGGTCGA GATCCCCGCG
GCGATCCTCG TCGTTCTGGA GATCGTCGTG CTCCTGAGCG GCGTCGTCAG CCGCTACGCC
CTGCACCGGC CTCTGGTCTG GTCCGACGAA CTCGCCTCGA TCCTGTTCCT GTGGCTCGCC
ATGCTGGGGA CGGTCGTCGC CTTCCGGCGC GGCGAACACA TGCGCATGAC CGCCTTCGTC
GGCATGGCCA CGCCGCGTGC GCGGGCCTTC ATGGACACCC TGGCGATCGT GGCCGGCCTC
GTCTTCGTCG GGGTTCTGCT GGAGCCGGCC TTCGAGTTCG CGATCGAGGA ATCCTGGGTC
TACACGCCGG CCCTCGACCT CCCCAACACC TGGCGCGCCG CCGCCCTGCC GGTCGGGTTC
GCGCTGATGC TCGTCACCGC CGTGCTGCGC CTCGTGCAGG AGAGCGACTG GCGCCTCACG
GGCGCGGCTT TGGCTCTCGG GGCCGGCCTC GCCGCCGTGC TCGCCGGCCT GTCGCCGCTC
CTGAGCAGCA TCGGCAACCT CAACCTGCTG GTGTTCTTCC TGCTTGGTGT CGGCGCCCTG
GTGTTCTCCG GCGTGCCGAT CGCCTTCGCC TTCGGGCTCT CGACCTACGC CTACCTCATG
AGCACGACCT ACGCGCCCGC CATGGTCGTC GTCGGGCGCA TGGACGAGGG CATGAGCCAT
CTCATCCTGC TGGCGGTGCC GCTGTTCATC TTCCTCGGCC TCCTGATCGA GATGACCGGC
ATGGCCCGCG CCATGGTCGG TTTCCTGGCA AGCCTGTTGG GCCATGTGCG CGGCGGCCTG
CACTACGTGC TGGTGGGGGC GATGTACCTC GTCTCCGGCA TCTCCGGCTC GAAGGCCGCC
GACATGGCCG CCGTCGCCCC GGTGCTGTTT CCCGAGATGA AGGCGCGCGG CGCCAAGGAG
GGCGATCTCG TCGCGCTGCT CTCCGCGACC GGCGCCCAGA CCGAGACGAT CCCACCGTCG
ATCGTGCTCA TCACCATCGG CTCGGTGAGC GGCGTCTCGA TCACCGCCCT GTTCACCGGC
GGGCTGCTGC CGGCCGTCGT CCTCGGCGCG ACGCTGTGCG CGCTGGTCTG GTGGCGCTAC
CGCGGCGAGG ACATGAGCCA CGTCGTCCGC CCCGGTCGGA AGGCGATCCT GAAGGCGCTC
GTCGTGGCGG TGCCGGCGCT CGCGCTGCCC TTCGTCATCC GGGCCGCGGT GATCGAGGGT
GTGGCCACCG CCACCGAGGT CTCGACGATC GGCATCGTCT ACGCCGTGCT GGCGGGGCTC
CTCGTCTACC GGCAGTTCGA CTGGCGCCGC CTCATGCCCA TGCTGGTGAC GACGGCGACG
CTGTCGGGGG CGATCCTGCT GATCATCGGC GCGGCCACCG CCATGGCCTG GGCGCTGACG
CAGTCCGGCT TCTCGCAGGC GCTCGCCGTC GCGATGAAGG AACTGCCCGG CGGCGCGCTC
GGCTTCCTCG TGGTCTCCGC CCTCGCCTTC ATCCTGCTGG GTTCGGTGCT GGAGGGAATC
CCGGCGATCG TCCTGTTCGG GCCGCTGATG TTTCCCATCG CCCGGGCCGT GGGCGTGCAC
GAGGTGCACT ACGCCATGGT CGTGGTTCTC GCGATGGAAA TCGGCCTGTT CGCCCCGCCC
TTCGGCGTCG GCTACTACGC GGCCTGCGCC ATCAGCCGCA TCCATCCCGA TGCCGGCATG
CGGCCGATCA TCGGCTACGT CGCGGCGCTG CTGGTCGGGC TGATCGTGAT CATCCTGGTG
CCCTGGTTCT CGATCGGCTT CCTCTAA
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| Protein sequence | MQLDVQLDAP APAAPVPAAG QSSYLQTFDR VFGRMVEIPA AILVVLEIVV LLSGVVSRYA
LHRPLVWSDE LASILFLWLA MLGTVVAFRR GEHMRMTAFV GMATPRARAF MDTLAIVAGL
VFVGVLLEPA FEFAIEESWV YTPALDLPNT WRAAALPVGF ALMLVTAVLR LVQESDWRLT
GAALALGAGL AAVLAGLSPL LSSIGNLNLL VFFLLGVGAL VFSGVPIAFA FGLSTYAYLM
STTYAPAMVV VGRMDEGMSH LILLAVPLFI FLGLLIEMTG MARAMVGFLA SLLGHVRGGL
HYVLVGAMYL VSGISGSKAA DMAAVAPVLF PEMKARGAKE GDLVALLSAT GAQTETIPPS
IVLITIGSVS GVSITALFTG GLLPAVVLGA TLCALVWWRY RGEDMSHVVR PGRKAILKAL
VVAVPALALP FVIRAAVIEG VATATEVSTI GIVYAVLAGL LVYRQFDWRR LMPMLVTTAT
LSGAILLIIG AATAMAWALT QSGFSQALAV AMKELPGGAL GFLVVSALAF ILLGSVLEGI
PAIVLFGPLM FPIARAVGVH EVHYAMVVVL AMEIGLFAPP FGVGYYAACA ISRIHPDAGM
RPIIGYVAAL LVGLIVIILV PWFSIGFL
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