| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1944 |
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| Symbol | |
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| ID | 5831828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | + |
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| Start bp | 2164406 |
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| End bp | 2166409 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641367744 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001639414 |
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| Protein GI | 163851371 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.89702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.562676 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGAGG CGGCCGTAAG CAAGGTCGAG ACGCTGCAGC GTCCCAAGAC CCGCGACGTG
TCCCTCGACG ACGTGGAGCG TGGCGTCCAG AGCGCCACCC GCGCCCTCAC CGAGATGACG
CAGGCGGATG GCCACATCTG CTTCGAGCTC GAGGCGGATG CGACCATCCC CTCCGAGTAC
ATCCTGTTCC ACCAGTTCCG CGGGACCGAG CCGCGGCCCG GCCTCGAGGC CAAGATCGGC
AACTACCTGC GCCGCACCCA GTCGAAGGTG CATGGCGGCT GGGCGCTGGT GCATGACGGC
CCGTTCGACA TGAGCGCGTC GGTAAAGGCC TACTTCGCCC TCAAGATGAT CGGCGACGAC
ATCGAGGCGC CGCACATGCG CGCGGTGCGC AAGGCGATCC TCCAGCGCGG GGGCGCGGCC
AACGCCAACG TCTTCACCCG CATCCTGCTC GCGCTCTACG GCGAAGTGCC GTGGGCGGCG
GTGCCGGTGA TGCCGGTGGA GGTGATGCAC CTGCCGAAGT GGTTCCCGTT CCACCTCGAT
AAGGTGTCCT ACTGGGCCCG CTGCACCATG GTGCCGCTGT TCGTGATCCA GGCCAAGAAG
CCGCGGGCGA AGAACCCGCG CGGCGTCGGC GTGGCCGAAT TGTTCGTGAC GCCGCCCGAT
TCGGTGCGGA CCTGGCCGGG CTCGCCCCAC GCCACCTGGC CGTGGACGCC GATCTTCGGC
GGCATCGACC GCGTGCTGCA GAAGACGCAG GACCACTTCC CGAAGGTGCC GCGCCAGCGC
GCCATCGACA AGGCGGTCGC CTGGGTCTCC GAGCGGCTGA ACGGCGAGGA CGGCCTCGGC
GCCATCTTCC CGGCCATGGT CAACTCGGTG CTGATGTACG AGGTGCTGGG CTATCCGCCC
GAGCACCCGC AGGTGAAGAT CGCGCTGGAA GCCATCGAGA AGCTCGTCGC CGAGAAGGAG
GACGAGGCCT ATGTCCAGCC CTGCCTGTCC CCGGTCTGGG ATACGGCGCT GAACAGCCAC
GCCATGCTCG AAGCCGGCGG CCATCAGGCG GAGGCCAATG CCCGCGCCGG CCTCGATTGG
CTGAAGCCGC TCCAGATTCT CGACATCAAG GGCGACTGGG CCGAGACCAA GCCCAACGTG
CGCCCCGGCG GCTGGGCGTT CCAGTACGCC AACCCGCACT ATCCCGACCT CGACGACACC
GCCGTCGTCG TGATGGCGAT GGATCGCGCC CAGCGTCAGC ACGGGCTGGT CAGCGGCATG
CCGGACTATT CGGAGTCGAT CGCCCGTGCC CGCGAGTGGG TCGAGGGGCT TCAGAGCGCC
GATGGCGGCT GGGCGGCGTT CGATGCCGAC AACAACCACC ACTATCTCAA CCACATCCCG
TTCTCGGATC ACGGCGCGCT GCTCGATCCG CCGACCGCGG ACGTGACCGC CCGCGTCGTC
TCGATGCTGT CGCAGCTCGG CGAGACCCGC GCGACCAGCC GGGCGCTCGA CCGCGGCGTG
ACCTACCTGC TCAACGACCA GGAGAAGGAC GGGAGCTGGT ACGGCCGCTG GGGCATGAAC
TTCATCTACG GCACGTGGTC GGTGCTGTGC GCGCTCAACG CCGCCGGGGT CGATCCGCAG
TCGCCTGAGA TCCGCAAGGC GGTGGCGTGG CTCATCCGCA TCCAGAACCC GGATGGCGGC
TGGGGCGAGG ATGCCTCCTC CTACAAGCTC AACCCCGAAT TCGAGCCGGG CTACTCGACC
GCCTCGCAGA CGGCCTGGGC CCTGCTCGCG CTGATGGCGG CGGGCGAGGT CGATGATCCG
GCGGTCGCCC GCGGCGTCAA CTACCTCGTG CGCACGCAGG GGCAGGACGG GCTGTGGAGC
GAGGAGCGCT ACACCGCGAC CGGCTTCCCG CGGGTGTTCT ACCTGCGCTA CCACGGCTAC
CCGAAGTTCT TCCCGCTCTG GGCGATGGCC CGCTTCCGCA ACCTGAAGCG GGGCAACAGC
CGGCAGGTGC AGTTCGGCAT GTGA
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| Protein sequence | MREAAVSKVE TLQRPKTRDV SLDDVERGVQ SATRALTEMT QADGHICFEL EADATIPSEY
ILFHQFRGTE PRPGLEAKIG NYLRRTQSKV HGGWALVHDG PFDMSASVKA YFALKMIGDD
IEAPHMRAVR KAILQRGGAA NANVFTRILL ALYGEVPWAA VPVMPVEVMH LPKWFPFHLD
KVSYWARCTM VPLFVIQAKK PRAKNPRGVG VAELFVTPPD SVRTWPGSPH ATWPWTPIFG
GIDRVLQKTQ DHFPKVPRQR AIDKAVAWVS ERLNGEDGLG AIFPAMVNSV LMYEVLGYPP
EHPQVKIALE AIEKLVAEKE DEAYVQPCLS PVWDTALNSH AMLEAGGHQA EANARAGLDW
LKPLQILDIK GDWAETKPNV RPGGWAFQYA NPHYPDLDDT AVVVMAMDRA QRQHGLVSGM
PDYSESIARA REWVEGLQSA DGGWAAFDAD NNHHYLNHIP FSDHGALLDP PTADVTARVV
SMLSQLGETR ATSRALDRGV TYLLNDQEKD GSWYGRWGMN FIYGTWSVLC ALNAAGVDPQ
SPEIRKAVAW LIRIQNPDGG WGEDASSYKL NPEFEPGYST ASQTAWALLA LMAAGEVDDP
AVARGVNYLV RTQGQDGLWS EERYTATGFP RVFYLRYHGY PKFFPLWAMA RFRNLKRGNS
RQVQFGM
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