| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1942 |
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| Symbol | |
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| ID | 5831826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium extorquens PA1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010172 |
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| Strand | + |
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| Start bp | 2162209 |
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| End bp | 2163060 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641367742 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001639412 |
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| Protein GI | 163851369 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.802248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCA CCGCCACCCC GATGCCGGGC GAGACCCCGG AAGCGTCTGC CCTGCCGGCC
GCCGGCTCGT CCTTCTACAC GGCGATGCGC CTGCTGCCGA AGGAGCGGCG CGAGGCGATG
TATGCCGTCT ACGCCTTCTG CCGGGTCGTG GACGATGTCG CCGATGACGG CGGCCCGCGT
GAGGTCCGCG CGGCCGAGCT CGACCGCTGG CGGGCCGATA TCGACGCGCT CTATGCCGGC
CATCCTCCCG CGCGGGTGAA GCCGCTCGAA GAGCCGATGC GCCGCTTCGA CCTCAAGCGC
GAGGACTTCC AGGCCGTGAT CGACGGCATG GCGATGGACG CGGAGGAGGA CATCGTCGCC
CCATCGGAAG CCAAGCTCGA CCTCTATTGC GACCGGGTCG CGAGCGCCGT TGGGCGGCTC
TCGGTGCGCA TCTTCGGCAT GCCGGAGGCG GACGGAATCC GCCTCGCGTG GCACCAAGGC
CGGGCGCTCC AGCTGACCAA CATCCTGCGC GACATCGACG AGGATGCGGA ACGCGGGCGC
CTCTACCTGC CGATGGAGAA ATTCCACAAG ATCGGGCTGA TGAACCCGAC TCCGCAGAGC
GCGCTGGCGC ATCCGCGCCT CGGCGAGGTC TGCGCGGCGG TCGCCGCCGA AGCGGAAGAG
CATTACCGCC AGACCTGGGC GATCATCGAG CGCAGCCCGC GTCGCGCCAC CAAGGCGGCC
CGCCTGATGG CGGCGGCCTA CCGGCTCTAC CTCGACGCCG TGGTCAAGCG CGGCTGGGCG
GCCCCGCGGG CGCGGGTGAA GCCGGGCAAA TTCCCCCTTC TCCTCGTCGC TTTGCGCCAC
GGGATTCTGT GA
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| Protein sequence | MSATATPMPG ETPEASALPA AGSSFYTAMR LLPKERREAM YAVYAFCRVV DDVADDGGPR
EVRAAELDRW RADIDALYAG HPPARVKPLE EPMRRFDLKR EDFQAVIDGM AMDAEEDIVA
PSEAKLDLYC DRVASAVGRL SVRIFGMPEA DGIRLAWHQG RALQLTNILR DIDEDAERGR
LYLPMEKFHK IGLMNPTPQS ALAHPRLGEV CAAVAAEAEE HYRQTWAIIE RSPRRATKAA
RLMAAAYRLY LDAVVKRGWA APRARVKPGK FPLLLVALRH GIL
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