Gene Mext_1641 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMext_1641 
Symbol 
ID5832582 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium extorquens PA1 
KingdomBacteria 
Replicon accessionNC_010172 
Strand
Start bp1830117 
End bp1831931 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content70% 
IMG OID641367439 
Productshikimate kinase., 3-dehydroquinate synthase 
Protein accessionYP_001639111 
Protein GI163851068 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase
[COG0703] Shikimate kinase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.124892 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGGCTTT CGACTCGGCG CCGACGGGGG TACCGGACGC TTCGCCGCTT CCGCAAAACC 
GTCTATGACC GCCCGATGAC CGTCCCCCTG CCGCCGGCGC CGCCGCCCGG CGAACCGATC
GAAGCACGAC TGCGCCGCGG CCTCGGAGCC CGGTCGATCG TGCTCGTCGG CCTGATGGGG
GCGGGCAAGA GCACCGTCGG GCGCCGCCTG GCGGGGCGTC TCGGGCTGAT GTTCAAGGAT
GCCGACCACG AGATCGAGGC GGCGGCCAAG CTCACCATCG CCGACATTTT CTCGATCTAC
GGCGAGGCGA GCTTCCGCGA GGGCGAGGAA CGGGTGATCG CGCGTCTGCT GCGCGAGGGG
CCGATGGTGC TGGCCACCGG AGGCGGCGCC TTCATGCGCG AGGCGACGCG GGCGCGGATC
GCCGAGGGGG CCATCTCGGT CTGGCTCAAG GCCGACCTCG ACGTGCTGAT GCGACGCGTG
CGCAAACGCA ACACGCGCCC TCTGCTCCAG ACCGAGGATC CGGAGGCGAC CATGCGCACA
CTGATGGAGG TGCGCCATCC GGTCTATGCC CAAGCCGATG TCACGGTGCT GTCCCGCGAA
GTGTCCCACG ACCGCGTGGT GGAGGACGTG ATGGAAGCTC TCGATATCCA CATCAACCCG
TCTCATACGA CACAATCACA ACATTTGACA TTCAGTATGA CGCAGCAACC CTCGCGTGTG
AACGTTCCCC TGTCGGGCGG ACGCGAATAC GATATTCGGA TCGGTCGGGG TCTTATCGAC
GCGGTGGGTG CGGAGGCGCG GGATCTCGGC GCCCGGGCCG CCGGCATCGT CACCGACGAG
ACGGTCGCCG GCCTCTACGG CGAGCGTGTG CGGGCCAGCC TCGAGGCCGC CGGGTTGCGC
TGCGGCATCA TCGCCGTGCC GCCGGGTGAG GCCTCGAAGA GCTACGCGGA ATTCGCCCGC
GTCTGCGACG GCCTGCTCGC CCAGAAGATC GAGCGCGGCG ACCTCGTCGT GGCGCTCGGC
GGCGGCGTGG TCGGCGATCT CGCGGGCTTC GCGGCGGCCT CCCTGCGGCG CGGTGTCCGC
TTTCTCCAGG TTCCGACCAC CCTGCTCGCG CAGGTTGATT CCTCGGTGGG GGGAAAGACC
GGGATCAATT CGCCGCTCGG CAAGAATCTG ATCGGCGCCT TCCACCAGCC CCGCCTCGTA
CTGGCCGACA CCGCCACCCT CGACACGCTC TCGGAGCGCG AGATGCGGGC GGGTTACGCC
GAGGTCGCCA AGTATGGCTT GATCGGGGAT GCCGGCTTCT TCGAGTGGTG CGAGGCGAAC
TGGGCCGGCA TCTTCTCCGG TGGGCCGGAG CGCGACGAGG CCGTGGCCGC CTGCTGCCGC
GCCAAGGCCG GCGTCGTGAC CCGCGACGAG CGGGAGGACG GCGAGCGCGC CCTGCTCAAT
CTCGGCCATA CCTTCGGCCA CGCCCTGGAG CGGCTGACCG GCTACGACGC GGCCCGCCTC
GTCCACGGCG AGGGCGTCGC GATCGGTCTG GCGCTGGCCT TCCGCTTCTC GGCCCGGCTC
GGCCTCTGCC CCGGCCAGGA TGCGGGACGC GTGGCCAACC ACCTCGCGCT CGCCGGCCTG
CCGACCCGCC TGCAACAGGT GCCCGGCGGG GCGGGTGACC CGGACGCCCT CCTCGACGCC
ATGGCCCAGG ACAAGAAGGT CCGCGACGGG CAGCTCACCT TCATCCTCGC CCACGGCATC
GGCCAGAGCT TCATCGCGCC GGGCATCGAT GCGGCGGAGG TGCGGGCCTT CCTGGAGGCG
GAACTGCGGG GCTGA
 
Protein sequence
MGLSTRRRRG YRTLRRFRKT VYDRPMTVPL PPAPPPGEPI EARLRRGLGA RSIVLVGLMG 
AGKSTVGRRL AGRLGLMFKD ADHEIEAAAK LTIADIFSIY GEASFREGEE RVIARLLREG
PMVLATGGGA FMREATRARI AEGAISVWLK ADLDVLMRRV RKRNTRPLLQ TEDPEATMRT
LMEVRHPVYA QADVTVLSRE VSHDRVVEDV MEALDIHINP SHTTQSQHLT FSMTQQPSRV
NVPLSGGREY DIRIGRGLID AVGAEARDLG ARAAGIVTDE TVAGLYGERV RASLEAAGLR
CGIIAVPPGE ASKSYAEFAR VCDGLLAQKI ERGDLVVALG GGVVGDLAGF AAASLRRGVR
FLQVPTTLLA QVDSSVGGKT GINSPLGKNL IGAFHQPRLV LADTATLDTL SEREMRAGYA
EVAKYGLIGD AGFFEWCEAN WAGIFSGGPE RDEAVAACCR AKAGVVTRDE REDGERALLN
LGHTFGHALE RLTGYDAARL VHGEGVAIGL ALAFRFSARL GLCPGQDAGR VANHLALAGL
PTRLQQVPGG AGDPDALLDA MAQDKKVRDG QLTFILAHGI GQSFIAPGID AAEVRAFLEA
ELRG