Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mext_1580 |
Symbol | trmE |
ID | 5833773 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium extorquens PA1 |
Kingdom | Bacteria |
Replicon accession | NC_010172 |
Strand | + |
Start bp | 1762370 |
End bp | 1763704 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641367378 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_001639050 |
Protein GI | 163851007 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.183316 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCCAC CCCTTCCCGA CCGCGACGAC ACGATCTTCG CTCCGGCGAG CGGCTTCGGC CGTGCGGCGG TGACGGTGGT GCGCATCAGC GGGCCGGCGG CGGGGCTTAC GCTCGACCGG CTGGCCGGCG GGCGCCCGGA GCCGCGCCGT CTCTCCCTGC GCTGCCTGCG CGACCCCGAA TCCCGCGACA TCCTCGATCA GGCCCTGGTC GCATGGCTGC CGGGCCCTGC CACGGCCACC GGCGAGGACA TGGCCGAGCT GCATCTGCAT GGGGGCCTCG CCGTGCGGTC CGCCGTGCTG CGGGCGCTCG GGCGCGTACC GGGTTGCCGG CCGGCGGAAG CCGGGGCGTT CAGCCGCCGC GCCTTCCTCA ACGGCCGCAT CGACCTGACC GAGGCGGAGG GCATCGCCGA CCTCATCGAC GCCGAGACCG AAGCGCAGCG TGTCCAGGCC CTGCGTCAGA TCGACGGCGC CCTCGGCCGC CAAGTCGCGG CATGGCGCGA GACCGGCATC GATCTGCTCG CCGGAGCGGA AGCGGCCCTC GATTTTGCCG ATGAAGGCGA TGTCGATGAG GCCGGCCTCG ACGCTGCCCT GTCCGGCCGC GCCGCATTCT TGCGTGATGC GATCCGAGCC GCGCTGGCCG ACGGACGCCG GGGCGAGCGC CTGCGCGAGG GGTTCTGCGT CGTGCTGGCG GGTGCTCCCA ATGCCGGAAA ATCGACCCTG CTCAATGCGC TGACCGGGCG CGACGCGGCC ATCGTCTCCG ACATTCCCGG CACGACCCGC GATGCCATCG AGGTGCGCTG CGATCTCGGC GGGCTACCGG TCGTGCTGGT CGATACCGCA GGCCTGCGCG ATACGGCGGA TGCGATCGAG GCGGAGGGCG TCAAGCGCAC GCAAAGCCGG ATCCGCGGCG CCGACCTCGT GCTCCATCTC GTGCCGGCGG ACGGCGAGAC CGACGCGGGG CGCTTTGCGG ACGTCCCCCT CCTTCTCGTT CGCACGAAAA CCGACCTCGC GCCGGAGGTG CCGGGGGAGG GCGGCCTCGC CATCTCGGCC GTCACGGGGG CCGGACTCGA CGCGCTGTTG GATGCCATCC AGGCCGCGGC CCAAACGGCC CTCGGTCAGG GCGATGCCCT CGTCACCCGT GAGCGTCATC GCGAGGCTTT GTCCCGGGCT GCGGCGCATC TCGACCGTGT CGCCACCGCA TCGGCCGGTT TCCCGCCCGA ACTGGTGGCG GAGGACCTCC GGCTCGCCGT CCGGGCGCTG GGCGAGGTCG GGGGGCATGT CGGCGTCGAG GAGATGCTGG ACCGTCTCTT CGCCGGCTTC TGCATCGGCA AATAA
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Protein sequence | MSPPLPDRDD TIFAPASGFG RAAVTVVRIS GPAAGLTLDR LAGGRPEPRR LSLRCLRDPE SRDILDQALV AWLPGPATAT GEDMAELHLH GGLAVRSAVL RALGRVPGCR PAEAGAFSRR AFLNGRIDLT EAEGIADLID AETEAQRVQA LRQIDGALGR QVAAWRETGI DLLAGAEAAL DFADEGDVDE AGLDAALSGR AAFLRDAIRA ALADGRRGER LREGFCVVLA GAPNAGKSTL LNALTGRDAA IVSDIPGTTR DAIEVRCDLG GLPVVLVDTA GLRDTADAIE AEGVKRTQSR IRGADLVLHL VPADGETDAG RFADVPLLLV RTKTDLAPEV PGEGGLAISA VTGAGLDALL DAIQAAAQTA LGQGDALVTR ERHREALSRA AAHLDRVATA SAGFPPELVA EDLRLAVRAL GEVGGHVGVE EMLDRLFAGF CIGK
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