| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1489 |
|---|
| Symbol | |
|---|
| ID | 5832002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | - |
|---|
| Start bp | 1665598 |
|---|
| End bp | 1666434 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641367289 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001638961 |
|---|
| Protein GI | 163850918 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.130432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCA GGGCCTTCGT CGTCGGCCAT CCGATCCGGC ATTCCCGCTC GCCGCTGATC
CACGGGCACT GGCTCGCCGA GTACGGGTTG GATGGCAGCT ACGAGCGCAT CGACGTGGCG
CCAGAGGCGT TCGAGGCCTT CATCCGCGGG CTTCCGGCCT CGGGCTTTGC CGGCGGCAAT
GTCACCATCC CGCACAAGGA GGCGGCCTAT CAGTTGGCGG ACTCCCTGAC GGAGCGGGCG
AAAAAGATTG GCGCGGTGAA CACGCTGATC GTCGAGGGCG GCCGCGTCCG CGGCGACAAC
ACCGACGCGC CGGGCTTCAT CGCCCATCTC GATCACAGCC TCGGGGAGCG CTGGCCCGAG
CGGACCGGCG GGTCCGCCCT CGTGCTCGGC GCGGGCGGCG CGGCGCGGGC CATCGTCGTC
GGGCTGGTGG AGCGGGGGCT CTCGGTCCGC ATCGCCAACC GCAGCCCCGA GCGGGCGCGG
GTGCTCGCCG AACTCGATCC CGAACACATC GAGGCGCTGG CCTGGGAGGC CGTGCCGGAC
GCACTCTCCG ACACCGGGCT TCTCGTCAAC ACCACCTCGC TCGGGATGGC AGGCCACCCG
CCGCTCGACC TCGACCTCGC CCCGCTCCCG GACCGCGCGG CGGTGGCCGA CATCGTCTAC
GTGCCGCTGG AGACGCCGCT GCTCGCTGCG GCGCGGGCGC GGGGGCTCGC AGCGGTCGAC
GGGCTCGGCA TGCTGCTGCA CCAGGCGGTG CCGGGCTTCG CGGCATGGTT CGGCCTGCGG
CCCGAGGTGA CGCCGGCCCT GCGCCAAATA ATCGTCGCGG ATCTCGTCGC GAAATGA
|
|---|
| Protein sequence | MTARAFVVGH PIRHSRSPLI HGHWLAEYGL DGSYERIDVA PEAFEAFIRG LPASGFAGGN
VTIPHKEAAY QLADSLTERA KKIGAVNTLI VEGGRVRGDN TDAPGFIAHL DHSLGERWPE
RTGGSALVLG AGGAARAIVV GLVERGLSVR IANRSPERAR VLAELDPEHI EALAWEAVPD
ALSDTGLLVN TTSLGMAGHP PLDLDLAPLP DRAAVADIVY VPLETPLLAA ARARGLAAVD
GLGMLLHQAV PGFAAWFGLR PEVTPALRQI IVADLVAK
|
|---|
| |