| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_1154 |
|---|
| Symbol | |
|---|
| ID | 5834713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 1264897 |
|---|
| End bp | 1265601 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641366947 |
|---|
| Product | ThiJ/PfpI domain-containing protein |
|---|
| Protein accession | YP_001638627 |
|---|
| Protein GI | 163850584 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.0937941 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCGC CCGACACTCA CCTGGAAATC GGCTCCCTCT TGTTCGAAGG CGTCGACCAG
ATCGATCTCA CCGGCCCGTT CGAGGTCCTG TCGCGCATCC CGAACGCGAC CTACCGCGTC
TACGGCAAGA CGGCCGAGAC GGTCCGGGAC GTTCGCGGCC TGAGGCTGAC GCCGGACGCG
GCGATCGAGG ACGCGCCGCA ACTCGACGTG CTGCACGTCC CCGGCGGTTT CGGCCAGGAG
GATCTGATGG AGGACGAGGC CGTCCTCGCC TGGCTCCGCC GCCAGGCGGG CGGCGCGCGG
AGCGTCTTCT CGGTCTGCAC CGGCGCCCTG CTCTGCGGCG CCGCGGGCCT CCTGAGAGGC
CGCCGCGCTA CGACCCACTG GGCCTCGTTC GATCTGCTGC CCTACTTCGG CGCGATCCCC
GTCGACCAAC GGGTGGTCGT CGACGGCACA TGGGTGTTTG CGGCGGGCGT CACGGCCGGG
ATCGACGGCG CCCTTCGGTT GGCCGCGGAG CTGCGCGGCG AGGATGCCGC GAAGGCGATC
CAGCTCTACA TGGCCTACGC GCCCGAGCCG CCCTTCGACA GCGGCACCCC GGAGAGGGCG
CCGCCGGCCA TCCTCGAACA GGCCCGCGCC GCGGTAGCGG CGATCACGGA ACGCCGCACG
GCCACCGCCC GGCGCGTCGC CGCCCGGCTC GGCGTGCAGC CTTGA
|
|---|
| Protein sequence | MIPPDTHLEI GSLLFEGVDQ IDLTGPFEVL SRIPNATYRV YGKTAETVRD VRGLRLTPDA
AIEDAPQLDV LHVPGGFGQE DLMEDEAVLA WLRRQAGGAR SVFSVCTGAL LCGAAGLLRG
RRATTHWASF DLLPYFGAIP VDQRVVVDGT WVFAAGVTAG IDGALRLAAE LRGEDAAKAI
QLYMAYAPEP PFDSGTPERA PPAILEQARA AVAAITERRT ATARRVAARL GVQP
|
|---|
| |