| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mext_0660 |
|---|
| Symbol | |
|---|
| ID | 5835346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium extorquens PA1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010172 |
|---|
| Strand | + |
|---|
| Start bp | 717913 |
|---|
| End bp | 719520 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641366443 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_001638145 |
|---|
| Protein GI | 163850102 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.288846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCTAAGC TCACCCAGAC CAAGCCCAAG GTCCTCATCA CCGACGCCCT GTCCGACGCC
GCCGTCCAGA TCTTCCGCGA TCGCGGCATC GAGGTCGATT TCCAGCCCGG CCTCGGCAAG
GACAAGGAGG CGCTGGCCGC CATCATCGGC CAATATGACG GCCTCGCCAT CCGCTCCGCC
ACCAAGGTGA CGGACAAGCT GCTGGCGCAA GCCACCCGGC TGAAGGTGAT CGGCCGCGCC
GGCATCGGCG TCGACACGAT CGATGTGCCG GCCGCGACCG CCAGGGGCGT GATCGTGATG
AACACGCCGT TCGGCAACTC GATCACCACC GCCGAGCACG CCATCGCCCT GATCTTCGCG
CTCGCCCGCC AGATCCCGGC GGCGGACGCC TCCACCCAGG CCGGCAAGTG GGAGAAGAAC
CGCTTCATGG GCGTCGAGCT GACGGCCAAG ACGCTCGGCG TCGTCGGCTG CGGCAATATC
GGCGCCGTGG TCGCCGACCG GGCGATCGGG CTCAAGCTGA AGGTGATCGC CTACGATCCC
TTCCTGACGC CGGAGCGCGC CTTCGAGATT GGCGTCGAGA AGGTCGAACT CGACGAATTG
CTGGCACGGG CCGACATCAT CACCCTGCAC GTGCCGCTCA CCGACAAGAC CCGCAACCTC
CTCTCGGAAG AGAACCTCGC TAAGACCAAG CGCGGCGTGC GCATCGTCAA CTGCGCCCGC
GGCGGCCTCG TGGACGAGAT TGCGCTGCGT GCCGCACTCG ATTCCGGCCA TGTCGCGGGC
GCAGCCCTCG ATGTGTTCGT GACCGAGCCG GCGATCGAGA ACCCGCTCTT CGGCCACCCG
AACGTGATCT GCACGCCGCA TCTCGGCGCC GCGACCTCCG AGGCACAGGA GAACGTGGCG
CTCCAGATCG CCGAGCAGAT GGCGGATTAC CTCCTCAGCG GCGCCATCAC CAACGCGATC
AACTTCCCCT CGATCTCGGC CGAGGAGGCG CCGCGCCTCA AGCCGTTCGT CGCCCTGTGC
GAAAAACTCG GCTCGTTCCT GGGCCAGCTC ACGGAAGCGC CGATCAAGGG CATCCGCATC
ACCTACGAGG GTGCGGTGGC CGGGATGAAC ACCCGGGCGC TGACCTCGGC AGCGGTGACC
GGCGTGCTGC GCCCGATCCT GCAAGAGGTG AACATGGTCT CGGCCCCCGT GATTGCGCGG
GATCGTGGGA TCGTCATCGA CGAGATCAAG CGCGAGGGCG GGGCCAGCGA CTACGAATCG
GTGGTGCGCA TCACCGTGGA TGCCGAGGAC ATGCCGCGCG ACGCCGCCGG CACCGTCTTC
AACGATGGCA AGCCGCGCGT CATCGAGATC CGCGGCATCA ACATCGACGC GCCCTTCGCG
CCGCTGATGC TCTACGTGCG CAACCACGAC AGGCCGGGCT TCGTCGGCAG CTTCGGCACC
GTACTCGGCG AGGCGGGCGT CAACCTCGCG ACCTTCGCGA TGGGCCGCGA GGCCGAGGGC
GGCAACGCCA TCGCCTTCGT GGCAGTCGAT GCCGAAGTCT CTCCCGAGGT TCTGAAGGCG
ATCGAAGCGA TCCCACAGGT GAAACGTGTC CGCCCCGTAC GCTTCTGA
|
|---|
| Protein sequence | MPKLTQTKPK VLITDALSDA AVQIFRDRGI EVDFQPGLGK DKEALAAIIG QYDGLAIRSA
TKVTDKLLAQ ATRLKVIGRA GIGVDTIDVP AATARGVIVM NTPFGNSITT AEHAIALIFA
LARQIPAADA STQAGKWEKN RFMGVELTAK TLGVVGCGNI GAVVADRAIG LKLKVIAYDP
FLTPERAFEI GVEKVELDEL LARADIITLH VPLTDKTRNL LSEENLAKTK RGVRIVNCAR
GGLVDEIALR AALDSGHVAG AALDVFVTEP AIENPLFGHP NVICTPHLGA ATSEAQENVA
LQIAEQMADY LLSGAITNAI NFPSISAEEA PRLKPFVALC EKLGSFLGQL TEAPIKGIRI
TYEGAVAGMN TRALTSAAVT GVLRPILQEV NMVSAPVIAR DRGIVIDEIK REGGASDYES
VVRITVDAED MPRDAAGTVF NDGKPRVIEI RGINIDAPFA PLMLYVRNHD RPGFVGSFGT
VLGEAGVNLA TFAMGREAEG GNAIAFVAVD AEVSPEVLKA IEAIPQVKRV RPVRF
|
|---|
| |