| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3985 |
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| Symbol | |
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| ID | 4180447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chelativorans sp. BNC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008254 |
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| Strand | + |
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| Start bp | 4290182 |
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| End bp | 4292374 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638069881 |
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| Product | periplasmic sensor diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_676517 |
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| Protein GI | 110636309 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.310873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTCAT TATCGAAATC GCTGGCTTCC CAGATTACCG TGGCTATTGC CCTGCTCACG
CTTCTTGCGC TGGCATCGCT CGCCGCCTTT ACGTGGTTCG CGGCGAGAAG GGCTGATGAA
GAAGCTCTGC GGACGCAAAA AATGCTCGTC CAGCGGGAGA TCTCTTCCAT AATGGCTGCT
GTCCCAAGAG AACAGGAAAG CTTTAGCGTA TGGGATGACG GCGTAATCCA CACCAACAAA
CGTGACGTCC AGTGGGTTGA GGAAAACTTC GGCGGCTGGA TGTACCGCTT CTTCAAGCAT
GACCGAACTT ACATAGTTGC TCCTGATGGT GAGCTCCTCC TTTCGGCCCG TGGCGAAGAT
GTGGTGAAGC CGCCGAGCTT TGGTGCGGAT TTTAGGGCTG CCGAGAGGGT AATGACTAAA
CTTCGCGAGC GCTTGCAGGC CCGGGAAGCA CCGTGGCAAG TCCCCGGCGG CGATATTTTC
GTCGTTGATA TCGATGAAAT TGAACAGCGC CCGGCCATCC TCAGCGCCAG ACCCATTCGG
CCTCATACGG ATGCTGTCGT TGTTCCCAAG GGGAAGGAAA GCATTTTCCT GGCGGTAAAG
TTTCTGGATG GGCCGGTGGT GAAGGAGATC GCCAGCACCA CGCTTGTAAA GGAACTTCGC
TACGAACCAG CGCGCGATTA CGTGCCCCAG CCTGGGAGCA TCGGGGTTGG CTCCCAACAG
GGTGACGTGA TCGGCTATTA CGTTTGGACT GCCGACCGGC CCGGGTTGGG CCTGATACGT
CAAATCGCAC CCTGGGCCTC ACTCGTACTT GCCTTTGCGG CTGGCATCGC GTTCTACCAG
GCACGCAAAT TGCGCCGCGC CTCGGCCGAA CTGCAGGAGA GCGAGGGACG CGCGCGCCAT
CTCGCCTTTC ACGATTGGCT GACGGGACTG CCCAATCGCG CGCGTCTGGA GAGCAGGCTC
GATGACATTC TAGCCGATCT GCTGCCGGGG CAGGCAGAGG CTGCCGTGCT TCTTCTGGAT
CTCGATCGAT TCAAAAATGT AAATGATACC CTCGGCCACC GCGCGGGCGA TCAGGTCATT
CAGCAGACAG CGCGGCGGCT GAAGGATATC GTCGGAAATA CCGGCCTCGT GGCTCGTCTC
GGCGGCGATG AGTTTGCCAT CGTGATAGCC TCTCGAAATG CCGTGGAGGC AGCCAGCGAA
CTGTCGGATA GGGTGCTCGC GGCATTTATC CCGCCCTTTC AGCTGGAGGG GGATACGGCG
CATATCGGCG TCAGCATTGG CATTGCCACC GCCCCTGAAG CGGCTTTGCA CCGCGAAGAG
ATCCTGCGCA AGGCTGACAT CGCCCTCTAT GAAGCCAAGA AGCAGGGCCG CGGCCGCTAT
GAACTTTTCT CCAGGACGAT GGACGATACC GTCAAGCAGC GCCGCCAGGT GGAGGCGGAT
CTGCGAAAGG CGCTCGCGAC GGGGAAAGAG CTCGAACTTG TCTACCAGCC TCTCTATTCG
GCGGAAGGCA GGATCACCGG CGCTGAGGCG CTCCTGCGCT GGAACCATCC CGTGCACCAA
TGCGTCTCGC CTCTGTTCCT TGTCACAATC GCCGAGGAAA GCGGGCTTAT TGCCCAAATC
GGTGATTGGG TGCTCCATGA GGCGTGCCGA ATGGCCAAGC GCGTGCCAGT CGCCTGGATC
GCCGTGAATG TCTCTCCGGT TCAGCTTCGC GATGCGGATT TTGCACGCCG GTGCCTCGAT
ATCATTCGGC ATCACCGGAT CGCGCCACAG AGGATTCAGA TCGAAGTCAC CGAAGCGGTT
GTCATCGAGA ATCCTGAACT TGCCGGCACG ATACTCGGCG CATTAAGGTC CGCCGGCGTT
CGCGTAGCGC TCGACGATTT CGGGACGGGC TATTCCTCCA TGAGCTACCT TCGGAATTAC
CCGCTGGACA GGCTCAAAAT CGACCGTTTT TTTGTGCGTG CGCTGCTGGA GGGCGAAGAA
GGGCGTGCGA TAATCGCAGC CATGATTGAA ATGGCGCGCG CTTTGAAGCT GAAGGTCACC
GCCGAGGGTG TGGAAACTCA GGAACAGCGC GACCTTCTTG TCAAACTAGG GTGTGATGAA
ATGCAGGGCT ATCTGTTTTC CCGGCCCATA CGGGCGCCGC ACTTCATCGC GAAGTTCTCT
TCCGCTGGCG GCGCTATATC TCCGAACTCC TGA
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| Protein sequence | MKSLSKSLAS QITVAIALLT LLALASLAAF TWFAARRADE EALRTQKMLV QREISSIMAA
VPREQESFSV WDDGVIHTNK RDVQWVEENF GGWMYRFFKH DRTYIVAPDG ELLLSARGED
VVKPPSFGAD FRAAERVMTK LRERLQAREA PWQVPGGDIF VVDIDEIEQR PAILSARPIR
PHTDAVVVPK GKESIFLAVK FLDGPVVKEI ASTTLVKELR YEPARDYVPQ PGSIGVGSQQ
GDVIGYYVWT ADRPGLGLIR QIAPWASLVL AFAAGIAFYQ ARKLRRASAE LQESEGRARH
LAFHDWLTGL PNRARLESRL DDILADLLPG QAEAAVLLLD LDRFKNVNDT LGHRAGDQVI
QQTARRLKDI VGNTGLVARL GGDEFAIVIA SRNAVEAASE LSDRVLAAFI PPFQLEGDTA
HIGVSIGIAT APEAALHREE ILRKADIALY EAKKQGRGRY ELFSRTMDDT VKQRRQVEAD
LRKALATGKE LELVYQPLYS AEGRITGAEA LLRWNHPVHQ CVSPLFLVTI AEESGLIAQI
GDWVLHEACR MAKRVPVAWI AVNVSPVQLR DADFARRCLD IIRHHRIAPQ RIQIEVTEAV
VIENPELAGT ILGALRSAGV RVALDDFGTG YSSMSYLRNY PLDRLKIDRF FVRALLEGEE
GRAIIAAMIE MARALKLKVT AEGVETQEQR DLLVKLGCDE MQGYLFSRPI RAPHFIAKFS
SAGGAISPNS
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