| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Meso_3858 |
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| Symbol | |
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| ID | 4182449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chelativorans sp. BNC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008254 |
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| Strand | + |
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| Start bp | 4159973 |
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| End bp | 4160662 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638069750 |
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| Product | conjugal transfer protein TrbF |
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| Protein accession | YP_676390 |
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| Protein GI | 110636182 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00683431 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATCT TCAAGCGACC GATGACCCGC TACGGCAAGA CGCCGGAACC GGAAACCCCT
TATCAACGCG CCGGCCAGGC ATGGGACGAC CGCATCGGCT CTGCCCGCGT GCAGGCCCGC
AACTGGCGCT ACATGGCCTT TGGCTGCCTG ATTCTGTCAG CGGGATTCGC CTCGGCTCTG
GTCTGGCAGT CGGCACGCGG GACAGTGGTG CCCTGGGTGG TCGAGATCGA CAGCCGGGGA
GAGGCCCGTG CGGTGGAACC CGCGGTCGCC GACTATCGCC CCAACGACCC CCAGATCGCC
TTCCACCTTG CCCGATTCAT CGAGCAGGTT CGCGGCCTGC CTGCCGATCC CATCGTCGTG
CGGCAAAATT GGCTGCGCGC CTACGACTTC ACGACCGACC GCGGCGCGGT CGCGCTCAAT
GACTATGCCC GCGCCAATGA TCCGTTCACC CGTGTCGGCC GTCAGCAGAT CAGTGTCGAG
GTATCCAGCG TCATCCGCGC TTCACCGGAT TCGTTCCGCG TCGCGTGGAC GGAGCGCCGC
TTCGAGAACG GCCAGCTCGC CGGCACCGAA CGATGGACCG CGATCCTGAC CATCGCGATC
CAGGCGCCGC GGGATGCCGA GCGTCTGCGG CGCAATCCCT TGGGAGTCTA CGTCAATGCA
ATCAACTGGT CTCGGGAGCT GGGGCAATGA
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| Protein sequence | MNIFKRPMTR YGKTPEPETP YQRAGQAWDD RIGSARVQAR NWRYMAFGCL ILSAGFASAL
VWQSARGTVV PWVVEIDSRG EARAVEPAVA DYRPNDPQIA FHLARFIEQV RGLPADPIVV
RQNWLRAYDF TTDRGAVALN DYARANDPFT RVGRQQISVE VSSVIRASPD SFRVAWTERR
FENGQLAGTE RWTAILTIAI QAPRDAERLR RNPLGVYVNA INWSRELGQ
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