| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_2160 |
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| Symbol | dapF |
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| ID | 4847154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanoculleus marisnigri JR1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009051 |
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| Strand | - |
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| Start bp | 2155394 |
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| End bp | 2156212 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640116868 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001048065 |
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| Protein GI | 126180100 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGATCG CGTTCACCAA ACTGCAGGGA AACGGCAACG ACTTCGTCCT GATCGACGAG
CACGACGGCG AGGTCATCCC GGAGGATATG AAGGGGGCGT TTGCGGCGCT ATTCTGCGAC
CGCAGGTTCG GCATCGGCGC CGACGGCGTC CTCTTCCTCC AGGCGTCCGA TAAGGCCGAC
GTCCGGATGC GGCTTTTGCA GCCCGACGAG AGCGAGGCCG CGATGTGCGG GAACGGTATC
CGCTGCCTCG CGAAGTACGC GTATGACGCC GGCTACGTGA AAGAGTCCTG CTCGGTCGAG
ACCGGGGCGG GGATCGTCCA GGTCTCGGCA GGCTACGCGG ACGACGAGTT CACCGCGACG
ATCACGATGC CGGCGCCCGC GTTCGAGCGG AGCGCCATCC CGGCCGCCGG GAACGGCGAA
TACAAGGAGG AGATCCGCAA CTTCACCGTG TATGCCGCGA ACACCGGCGT TCCCCACGCG
GTTGTTTTCG TCAAAGAAAT AGGCGCAGTC GATATCGCCG CCGTCGGCCC GGCCATCAGG
AACCACCCCT CCTTCGTAGA GGGCGCGAAC GTCAACTTCG TCGAAGAGGC CGGCAACGAC
ACGATCCGGA TCCGGACGTT CGAGCGCGGC GTCGAGGGCG AGACCGAGAG CTGCGGCACC
GGCGCGACGG CGTCCGCCGC GGTCGCCCAT CACCTCGGCA AAGTCGGGGA TACGGTAAGG
GTAGAGACAA AAGGCGGCCC GCTCGTGATC CGGTTCGGCG AGACCGTCAC GATGGAAGGT
CCCGCCGAGA CGGTCTTTTC CGGCGTTATA CCGTTCTGA
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| Protein sequence | MEIAFTKLQG NGNDFVLIDE HDGEVIPEDM KGAFAALFCD RRFGIGADGV LFLQASDKAD
VRMRLLQPDE SEAAMCGNGI RCLAKYAYDA GYVKESCSVE TGAGIVQVSA GYADDEFTAT
ITMPAPAFER SAIPAAGNGE YKEEIRNFTV YAANTGVPHA VVFVKEIGAV DIAAVGPAIR
NHPSFVEGAN VNFVEEAGND TIRIRTFERG VEGETESCGT GATASAAVAH HLGKVGDTVR
VETKGGPLVI RFGETVTMEG PAETVFSGVI PF
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