Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Memar_1656 |
Symbol | secD |
ID | 4847049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanoculleus marisnigri JR1 |
Kingdom | Archaea |
Replicon accession | NC_009051 |
Strand | + |
Start bp | 1662147 |
End bp | 1663604 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640116350 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001047565 |
Protein GI | 126179600 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00710078 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGGCG AAACCATCAA GAATCTCGTC AAAGACTGGC GGATCGCCCT GGTGCTCCTG CTGGTCGTCG GCTCCCTTGT CGGTATCTAC CTCGCTCCCC CGAGCCCGGA GAAGGGTATC GAGGGGAACC TCCAGTTCGG CCTCGATCTC GAGGGCGGTT CGTGGCTGCA GATGGAGTTC CAGTCCGTGG TCGTGGCATT CTCGACCGAC GGATCGGTCG GAGACCTCAT GGACGACCTG CGGACGGATC TCGAGACCGA GGTCATCCGC ATCGACGAGA ACCACCTCGA GATCCGAAAG AGCGTCACCC GTGCCGACCT CGAACCGATC TTTGCGGAAT CGGGCGCCTC GATCGTAACC CACCAGAAGG GCGTATCCGC GTTCACCGCA GACGAGGTGA AGAGGATCCT GAACGAGAAG GTGAACGCTC TCGGGATGCA GGACGCGAGG ATCAACCTGC TCACCCCGAC CGGAAGCGAG TTCCCGCAGT ACGTGCGGAT AGAACTCGCC GGCGTGGATA TGGCGACGGC GCAGGATATC GTCGGCCAGC AGGGCCTGTT CGAGATACGG GTCCAGACCA CAGGGAACGA GACCGAGCAC GTCCTCTACG GTGACCAGAT CACCAGCGTC GGCGTGCCGC AGAGGGATTC CGACGGCACA TGGAGCGTCG GGTTCTCGTT CACCGAGACG GGCGCAGAGG CCTTCCGTGA GGCCGCCATC GAATCCGGAG CGGTCGACAA CCCGGACGCC CACCACCTCG TGATGATCCT CGACAACGAG ACCGTCTACA GCGCCCCCCT CGCCGGAAAC CTTGTGAGCG AGCTCCGGGC GGGCCCGGTC AGGTCGCTCT CCGCAAGCAC CGGCACCGGC GACGCCGGGC TCGAGGATGC GATGACGCTC CAGATCCACC TGCGGGCCGG CGCACTGCCG GTGCAGGTGG ATATCGTCGG GTCCGGTTCC GTCCCGGCGG CGCTTGGCGA ACAGTTCAAG ATGACGGTCG CCATCGCCGG GCTGCTCGCG CTGCTCACCG TAGCGGTCGT CGTCTACTAC CGTTACCGCG AGCCCTCGAT CGTGATCCCG ATGGTCGCGA TCAACCTTGC AGAGATCATC ATCCTGCTCG GGATTGCCCG GTTCATCATC CAGCTCGACC TCGCCACCAT CGCCGGTCTG ATAGCGGTGG TGGGTACCGG CATCGACCAG CTCGTCATCA TCACGGACGA GGTTCTCCAC GAGGGGCGTG TCCCGTCGCC GAACCTCTAC ATGAAACGCT ACGGGCGGGC GCTCGGTATC ATCGCCGTCG CCGCCGCGAC GGTCTTCATC GCCATGCTCC CGCTGGCGCT GATGGATCTC TCCACTCTTC GGGGCTTTGC AATCATCACC ATACTCGGTG TCCTGATCGG CATCCTGGTC ACGAGGCCCG CGTACGGAAA GATAATCATG GCGATCCTCT CAAAATAA
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Protein sequence | MNGETIKNLV KDWRIALVLL LVVGSLVGIY LAPPSPEKGI EGNLQFGLDL EGGSWLQMEF QSVVVAFSTD GSVGDLMDDL RTDLETEVIR IDENHLEIRK SVTRADLEPI FAESGASIVT HQKGVSAFTA DEVKRILNEK VNALGMQDAR INLLTPTGSE FPQYVRIELA GVDMATAQDI VGQQGLFEIR VQTTGNETEH VLYGDQITSV GVPQRDSDGT WSVGFSFTET GAEAFREAAI ESGAVDNPDA HHLVMILDNE TVYSAPLAGN LVSELRAGPV RSLSASTGTG DAGLEDAMTL QIHLRAGALP VQVDIVGSGS VPAALGEQFK MTVAIAGLLA LLTVAVVVYY RYREPSIVIP MVAINLAEII ILLGIARFII QLDLATIAGL IAVVGTGIDQ LVIITDEVLH EGRVPSPNLY MKRYGRALGI IAVAAATVFI AMLPLALMDL STLRGFAIIT ILGVLIGILV TRPAYGKIIM AILSK
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