| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1617 |
|---|
| Symbol | |
|---|
| ID | 4847818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 1622465 |
|---|
| End bp | 1625638 |
|---|
| Gene Length | 3174 bp |
|---|
| Protein Length | 1057 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640116310 |
|---|
| Product | SMC domain-containing protein |
|---|
| Protein accession | YP_001047528 |
|---|
| Protein GI | 126179563 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0419] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCTGA ATAAACTCTG GATGCGCAAC TTCAAGCGCT TCCGCGACCA GGAGATCGTG
TTTCAGGACG GTATCACGGG GATCGTCGGG AACAACGGGA CCGGTAAGAG CAGCATCGTC
TCCGCCGTCC TCTTCGCCCT CTACGGCCTG CAGGGGACCG GTCTCGACGG GGATTACATC
GTCAGTTCCT TTGCGGGACC GCAGGACGTC TGCGAGGTTC GCCTGGACTT CTCGGTCGGC
GGCAACGAGT ACGCCGTCGT CCGCAAATTC AAACGCCGCC CCTCATCGAC CCTCCACGAG
GCAAACCTCT ACCTGAACCA GAAACTCCTC GCAAACAGCG TCCAGAAGGT GGGAGAGGAG
GTGCAGCGGA TCGTCGGCAT GGCCCCGGGC GACTTCCGGA ACACCATCTA CGCCGGGCAG
AAGGAACTCC TTGCCCTGCT CGAGACCCGG GCCGGGTCCC GGAAGGACTG GTTCATGCAG
GTGCTGGGTA TCGATTACCT CAAGAAGGAC AGCATGGAGC ACCTCAAATC GATCATCGAT
GCCCGGGAAG GAAGCTGCCG CGAGCTCTCC GGCCGGCTCC AGGAACTGGA TGCCGGCGGG
GTTCGCGGTC GTCTTGCGGC GCTCCGCACA GATCTCGCCG GGGCGGAGGA AGAGGCGGAG
GAGGCCCTGG GGAGAGAGAA GGCTGCCGCG GAGGAACTTG AGCATGCACG CACGGAGCGC
GACCGGCTGC TCTCCGTCCG CGAGCGTTAC CTGCACCTTG CACGGGAAGA GGAAGTGCTC
GCAGCCGAGA TCGAGCGGCT CCGCACCGAG TGCCGGGAGA CGGAAGGGGA GATCGCCGAA
CGGGAGCAGG TGCAGGCCGA ACTCGAAGGA CTCGCTCTCC TCGCCGACCG CTACGAGGCC
CTGAAAGCCG AGACGACCGC GATGGCCGAG GAGAAGGAGC TCGCCGACCG CCTGAGCCTC
GAAGCGAACG CTGCGGAGGA GCGGGTCAGG GAGTACGGCG AGCGCCGCAC AAAGGTCGAG
GCAGAACTCG CCGCGCTTGC AGAGGACGAA AAAGCAGTTG CCGGCCTTAC CCGCGAAGTC
GCGGAGTGGC AGGCCCTCCG CGATCGCATC GCTGCGATGA AAGAACTCCA GCCGGAGTAT
GACTCACTCC GCGAAGACCT CACGCGCATG GACGAGCGGT TCGCCCAGAT CGAGCGGCGA
GTCGGGGAGA ACCGGACGGA GATCGAAGGG ATCGAGGAGA AGGTCGGGCG TCTCCGCGCG
CTCGAAGAGG AGATCGGGGA GTACGATGCC CTCCTGGCCC GGGAAGAGGT CTTTCTCCGG
GCGCAGGAAC TCGCCCGGCA GGAGGAGCGG TGCCTGCGCG AGGTCGACGC GGCCTCCGAA
GAGATGAGTC TCCTCGAGAG CGAGATTGCC GGGCTTGCCC GGCAGCTTGC CGGGATGGGC
TCTATCGAAG ACGAGATAGA ATCCACGGAG AGCCGGAAAG AGTACCTGAC CTCGCGGATC
AGCGCGTGCG CGGAGCGGCA GGAGGCGCTC CGCGAGGAGA TCCGGAGGCT TGCCGAACAC
CGGGCGGAGA TTCTTGCCGC CGGCCCGGAG GGATCGTGCC CGACGTGCCA CCAGGGCCTC
GGCGACCACT ACGAGGAACT GGTCGGCGAT CTTGCAGCCG CTACGAACTC GATGCAGAAG
ACGCTCGCCG AACTCGAGGG CGAGCATGCG AGAGCGACCG CCGAACGAGA GAGCCTCGTC
GCCGTGCTGA AAGATCTTTA CGGGCAGCGC ACCGCCTGTC AACGCTTAAA AGAGCAGCAC
GCGCTGTATT CTTCCCGGTA CGAGCAGAGC GCGAGCGTCG GAGAGCGATG GCGGGCCGAG
GCGGAGGGGC ACCGTGCGGC GATGCGGGCG CTCGGGGTGG AGGGGTACGA CCCGGAGGCG
CACGCCGCGC TCAAGGAAGA GATCCGCGCT CTTGCGGAGA AGCGGGCGGC GGCCGATACC
CTCCGGGGCG AATGCAGTCG CCTCCCCGCC CTCCAGGAGG AGCGCCAGCA ACTCATCGCC
GACGTCGAGA ACTACCTCAG CCGCAAAGAG GAACTTGAAG CGAAGATCTC CCGGCTCGGG
TTCGATCCGG TGATCCGGCA GCGGCTGGAG GCGGAGGCGC AGGCACTCGA GCCGTCCTAC
CGGGCATATA CGGAAGCGCA GGCCCGGCTC GCGCGGCGGC CGGCGCTGGA AGAGGAACTG
CAGGGCATCT CTGCACGAGT CAACGGCCTC GCGGAGAGGC TGCAGGCTAT CCAGGCTGAA
CTCATCCGCC TCGCGTTCGA CCCCGACCGG TTCGCACGCC AGAGCGAGGA ATGCAACCGA
GCTGATACGG CGCACCGGAG AGCGTTCGAA CTCCGCGTCC GCCTTGAAGC AGTCCCGAGG
CTGATCGAGG CGCTGGAGGC GAAGCAGACC CTCCTCGCCA ACAGGGAGGC CGAACGGCTC
CGGGTCGGGG AGGCCGTCAA GGAACTCGGG TTTACCGAAG AGACGGTCAC GGCGGCAGAG
GAGCGGGTCG CGAACTGCGA ACGGGACCTC GCGGCGGCGC GGGAGCAGAG ATCCGCCGTT
GCTTTCCGGA TAAACAGCCT TAAGATGGAT ATCGAGAAAG AGACCGGGAG ACTCTCGCGT
GCGGCCGACC TCGTCAGGCA TCGGGAGACG CTCACCGAGG AGATCGGGCG GCTGAAACTG
ACCCGGTCGC TGATCAAAGA GTATACCGAT TACCTCCTCC AGGTGGTCAG GGACCGGATC
GAGGAGGAGG CGGGGTGGGT GCTTGCGGAG ATCACCGACG GGCGCTACGG GACGGTGATG
CTGGACGACG ACTTCACCGT CCTCGTCCAC GACATGGGCG ACGACTACCC GGCCGACCGG
TTCAGCGGCG GCGAGCAGGA CGATATCGCC ATCGCTCTCC GGGTGGCGCT CTCCCGGTTC
CTCGCCGAGG TGAACGAGGT GCACGACTCC ACGTTCCTGA TCTTCGACGA GATCTTCGGG
AGCCAGGATG AGGGACGGCG GAATAACCTT CTCCGGGCGC TCCGGACTCA GGAAGCCCAC
TTCCCCCAGA TCCTCCTGAT ATCCCACATC ACCGAGGTTC AGGACGAGTT CTCGACGACG
CTGATGGTCG AGATGGGCAC AGATCAGGCG AGCCAGGTCA GGGAGTTCGA ATGA
|
|---|
| Protein sequence | MLLNKLWMRN FKRFRDQEIV FQDGITGIVG NNGTGKSSIV SAVLFALYGL QGTGLDGDYI
VSSFAGPQDV CEVRLDFSVG GNEYAVVRKF KRRPSSTLHE ANLYLNQKLL ANSVQKVGEE
VQRIVGMAPG DFRNTIYAGQ KELLALLETR AGSRKDWFMQ VLGIDYLKKD SMEHLKSIID
AREGSCRELS GRLQELDAGG VRGRLAALRT DLAGAEEEAE EALGREKAAA EELEHARTER
DRLLSVRERY LHLAREEEVL AAEIERLRTE CRETEGEIAE REQVQAELEG LALLADRYEA
LKAETTAMAE EKELADRLSL EANAAEERVR EYGERRTKVE AELAALAEDE KAVAGLTREV
AEWQALRDRI AAMKELQPEY DSLREDLTRM DERFAQIERR VGENRTEIEG IEEKVGRLRA
LEEEIGEYDA LLAREEVFLR AQELARQEER CLREVDAASE EMSLLESEIA GLARQLAGMG
SIEDEIESTE SRKEYLTSRI SACAERQEAL REEIRRLAEH RAEILAAGPE GSCPTCHQGL
GDHYEELVGD LAAATNSMQK TLAELEGEHA RATAERESLV AVLKDLYGQR TACQRLKEQH
ALYSSRYEQS ASVGERWRAE AEGHRAAMRA LGVEGYDPEA HAALKEEIRA LAEKRAAADT
LRGECSRLPA LQEERQQLIA DVENYLSRKE ELEAKISRLG FDPVIRQRLE AEAQALEPSY
RAYTEAQARL ARRPALEEEL QGISARVNGL AERLQAIQAE LIRLAFDPDR FARQSEECNR
ADTAHRRAFE LRVRLEAVPR LIEALEAKQT LLANREAERL RVGEAVKELG FTEETVTAAE
ERVANCERDL AAAREQRSAV AFRINSLKMD IEKETGRLSR AADLVRHRET LTEEIGRLKL
TRSLIKEYTD YLLQVVRDRI EEEAGWVLAE ITDGRYGTVM LDDDFTVLVH DMGDDYPADR
FSGGEQDDIA IALRVALSRF LAEVNEVHDS TFLIFDEIFG SQDEGRRNNL LRALRTQEAH
FPQILLISHI TEVQDEFSTT LMVEMGTDQA SQVREFE
|
|---|
| |