Gene Memar_1498 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_1498 
Symbol 
ID4846261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand
Start bp1496202 
End bp1499444 
Gene Length3243 bp 
Protein Length1080 aa 
Translation table11 
GC content69% 
IMG OID640116190 
ProductUvrD/REP helicase 
Protein accessionYP_001047409 
Protein GI126179444 
COG category[L] Replication, recombination and repair 
COG ID[COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 
TIGRFAM ID[TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type
[TIGR02785] recombination helicase AddA, Firmicutes type 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGACTGA CTGAACGCCA GGCGCGGGCC GCGCTCGACC ACTCGACGAG CAAGTGCGTC 
ACCGCCGGTG CGGGGACGGG GAAGACGCAC GTCCTGGTGC AGAAGTACCT CAGCCTGCTC
GAATCCGGTG TCGGCGTCGG CAATATCCTC GCGCTCACCT TCACCGAGAA GGCGGCCGGC
GAGATGAAGA TCCGGGTCCG CCGGGCGATT GCGGAGAAGG AGGGCGAGCG GTGGGACGCG
ATCCGCGACG AGTTTTTGTG GGCGAAGGTA TCGACCTTCC ACTCCTTCTG CGCCTCGGTT
CTCCGGGAGT TTTCCATCGG GGCCGGCGTG GGGCCGTCCT TTGCCGTCCT CGACGAGGGG
GAGGCGTTCC GGCTCCGCGA GGAGGCGATC GACGACCTCA TCCACGGTGA TCCGCCCACG
GCGTGCCGGG ACGCGGTGAT CGGCGCTCTC CGGGCCGTCG GGGCCTACGA ACTGAAGAAC
TACCTCGAGG CGCTGTACTC CCGCCGCGGG GCTGCGGAAG CGTTCTTTGC CGCGCTCGCG
GAGAGCGAGG AGGAGGTGCT CGACGCCTGG CGGACGGCCC TGGAGCGGTG CCAAACGGAA
GCCCTGGAGG CCTTCCTCTC GCGGGCCGCC CCCTCTATCG AGACGCTTCG TGACCTTGCC
GCCCGCTACC CGGGCGAGCG CGACCCGGCC GGGGCCTACC TCCGGGCGGT CGAACCCTGC
CTCGCCGGCG AGATCGCGGT CGCCGAACTT GCCGCGGTTC ACGACAATTC GGGGTTCCGC
AAGAACATGG GGCAGAAGAA GAACTGGGAG GGGGACGACC TCGACAACCT CCGGGCGGCC
TACGGCGTCC TCAGGCAGTG CCTCACCGAT CACGCGGGTG CCTGCTCGCT CACCCTTGAT
GCGGCCGACC CCTTCACCCG GGCGACGCTC GACTTCCTCC GCGACCTCGG GGTGGTCTTT
AAGGCCTTCC TCGACTCGGT CGAGGCGGAG AAGCGGCGGA TGAACGCCCT CGACTTCGAC
GACCTGGTGA ACCGCACCCA CCGGCTCTTT CGCGACCGGG GGGACATCGT CGAGACGCAT
TTTAGGAGCC GGTTCCGGTT TATCCTGGTC GACGAGTTCC AGGATACCGA TCCCGTCCAG
ATCGCCATCA TCCGCACCCT CCTCGGCGAT TCCGCGAACC TGTTCGTCGT CGGCGACCCG
AAACAGTCCA TCTACCTCTT CCGGGAGGCC GACGTGACGC AGTTTTCGCA TACCCGCGAC
CTGATCGAGC GTGACCTCGG CGGGGAGACG GTCGCGCTCG ACGTCAACTT CCGGAGCACG
CCCGAGGTCG TCGGGTTCAC GAACGCCGTC TTTTCCGCCC TGATGGCGGA GGCCGGACGG
CCCTGGGAGT TCCTCTACGA ACCGCTGCAT GCGTTCCGCC GGGACGACGC CGGTTCGGTC
GAACTCCTCC TCTGCCAGAA GATCAGGGAC CGTGCGGCCG GCCGCCGGGC CGAGGCGGAG
ATGGCGGCAA GGAAGATCCG TTCTCTCGTC GAGCGGGGAG AGAAGCGGGT CTCCCGCGAC
GGGGAGGTCC GGCCGGCAGG CTACGGCGAC GTCGCCGTCC TGCTCGAGCG GCGGACGAAC
CTCGCCTACT ACGAGTGGGC GCTCGCCCGC TACGGCGTTC CCTACCACGT CCATGCCGGT
CTCGGGTTCT ACGAGCGCCA GGAGGTCTAC GACCTCTACA ACATCCTCCG GTTCCTCGCA
AACAACCTGG ACGACGCGGC GCTCTACGGC GTGCTGCGCT CACCCTACTT CGGGTTCTCC
GACGCCCGGC TCTTCCATAT CGCCCGGGCG CCCGGGGCTT CCCTCTGGGA GCGGCTGCAG
GCCGCGGCGG AGCCCGCGGC GGCGACCCTC CGTGAGTGGC TCTCGCTCTC CCGCAGGCTC
CCGCCCGCCC GCCTCCTCCG CCGGATCGTC GACGAGTCGG GGATCTTCGT CGTCTTCGGC
GGGATGGCCG GGGGCGAGCA GGCCGCGGCG AACGTCGAAA AGCTGATCGC CCTCGCGAGA
GATGCCGACT GCTCCACGCT CGCCGGTTTT GTCGCGGAAC TCGGCCGCTC CATCGACGCC
GGAGACCGGG AGGGGGATGC TCCTCTCGAC CTTGCATCCG CGGACTCGGT CTCGATCATG
ACGGTGCACG CCGCGAAGGG GCTCGAGTTC CCGGTCGTCG TCGTCCCCGA CCTTGCGGAG
ACGCCGCGGT CCGGCGGGGG CACCATCATG GTGGAGGACG GGCTGCTGCT CGGCGTCTCG
ATACCGAACC CGGCAAACGA CCACGAGCGC GAGGAGACGC CCGTCCTCCG GCTTCTCAAG
GACGAATACC GGCAGAAGGA GGAGGCGGAG CGCAAACGGC TCTTCTACGT CGCGGTCACC
CGGGCAGAGG ATCACCTCAT CCTCTGCGGG GAGATGCCGG TCGCGGTCCC GGAGAGCCTC
CGCGACGCCA GGACCCGGAT GGCCTGGCTC GCGCACTGCC TCGGGCTCTG CGACGAGGTC
TACGCCCGGG GCGAAGCCGT CCTCGGGACG CTCCGCATCC CGATCACCCT CGACCCCGCG
GCGATCCCGG TCGACGTGCA GGAGACCGTC CCGGTCTGCC TGCCGGTGCC CGACGACGTC
CCCGCGGCGC CCGTCCCGGC GGGCATTCCT TCCAATGGGA AGAAGGAGCG GGTCTACTCG
GCAAGCGAGC TTGAGGCGTA CCTCCGCGGC CCGGCGGAGT CACGGTTGCC GGTGTTCGCC
GCCGGGGAGG ATGCGCTGAC CCGCGGCCTC GTCGTCCACG AGGTCTTCCG CGGCCGCGAT
CCCGCCGCGG TGCTGCGGCG GTACGGGCTG GACCCTGCCG GGGCTGTGGA GTACCAGGAA
CTCTACGTCC GGTTCCTTGC ATCGCCCCTG ATGCGGGGGA TCGTCCGCGA CCACCGCGAG
GTGCCGTTTT CGGCCCGGGT GAACGGGTTT GCGTTCAGGG GGGTCATCGA CCGGCTGGTG
CAGCGGGTGA ACGGCACCTG GATGCTCATC GACTACAAGA CCGGGACGCC GGGGGACGCC
GGGGAGTATG CGATCCAGAT GGCGGTCTAT CATCGCGCCG CCGCCCAGAT CCTCAGCGCT
CCGGTCACGC CCTACCTCTA TTTCGTCGAT GCCGACCGCT GGGCGGAGAT CGAGGTGGAC
GAGGATCTGG TCTTTGCCGA GATTTCCCGT GCGATCAGCG GGATCGAGGA GGAAGGTCTT
TGA
 
Protein sequence
MGLTERQARA ALDHSTSKCV TAGAGTGKTH VLVQKYLSLL ESGVGVGNIL ALTFTEKAAG 
EMKIRVRRAI AEKEGERWDA IRDEFLWAKV STFHSFCASV LREFSIGAGV GPSFAVLDEG
EAFRLREEAI DDLIHGDPPT ACRDAVIGAL RAVGAYELKN YLEALYSRRG AAEAFFAALA
ESEEEVLDAW RTALERCQTE ALEAFLSRAA PSIETLRDLA ARYPGERDPA GAYLRAVEPC
LAGEIAVAEL AAVHDNSGFR KNMGQKKNWE GDDLDNLRAA YGVLRQCLTD HAGACSLTLD
AADPFTRATL DFLRDLGVVF KAFLDSVEAE KRRMNALDFD DLVNRTHRLF RDRGDIVETH
FRSRFRFILV DEFQDTDPVQ IAIIRTLLGD SANLFVVGDP KQSIYLFREA DVTQFSHTRD
LIERDLGGET VALDVNFRST PEVVGFTNAV FSALMAEAGR PWEFLYEPLH AFRRDDAGSV
ELLLCQKIRD RAAGRRAEAE MAARKIRSLV ERGEKRVSRD GEVRPAGYGD VAVLLERRTN
LAYYEWALAR YGVPYHVHAG LGFYERQEVY DLYNILRFLA NNLDDAALYG VLRSPYFGFS
DARLFHIARA PGASLWERLQ AAAEPAAATL REWLSLSRRL PPARLLRRIV DESGIFVVFG
GMAGGEQAAA NVEKLIALAR DADCSTLAGF VAELGRSIDA GDREGDAPLD LASADSVSIM
TVHAAKGLEF PVVVVPDLAE TPRSGGGTIM VEDGLLLGVS IPNPANDHER EETPVLRLLK
DEYRQKEEAE RKRLFYVAVT RAEDHLILCG EMPVAVPESL RDARTRMAWL AHCLGLCDEV
YARGEAVLGT LRIPITLDPA AIPVDVQETV PVCLPVPDDV PAAPVPAGIP SNGKKERVYS
ASELEAYLRG PAESRLPVFA AGEDALTRGL VVHEVFRGRD PAAVLRRYGL DPAGAVEYQE
LYVRFLASPL MRGIVRDHRE VPFSARVNGF AFRGVIDRLV QRVNGTWMLI DYKTGTPGDA
GEYAIQMAVY HRAAAQILSA PVTPYLYFVD ADRWAEIEVD EDLVFAEISR AISGIEEEGL