| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_0117 |
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| Symbol | |
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| ID | 4847018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanoculleus marisnigri JR1 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009051 |
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| Strand | + |
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| Start bp | 108491 |
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| End bp | 109315 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640114788 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_001046034 |
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| Protein GI | 126178069 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCGACC GGACCATCTA CAATATCTTC AGGCGGGGGA GCAGGACCTA CTTCTACTCG
ACCCTCTTCT TCCCGCCGGC GGTGCGGGAG GATGTCTTTT CGCTCTACAG CTTCGTCCGC
ACCGCCGACG ACTACGTGGA CGCCGTGCCG CAGGAGATCG AGGAGTTCTA CGCTTTCGCC
GACCGCTACG CCGCGGCCGA GGCCGGGGAG GCGACGGGAG ACGTGGTGGT CGAGTCGTTC
GTCGACCTTG CAGGGCGCAA AGGCTTTGAT CCGGCATGGA CAACGGCATT TCTCCGCTCC
ATGGAGAGCG ACATCATCGT CGGCTCTTAC CGGACGATCC GGGACCTCGA GGGCTATCTC
TACGGTTCGT CCGAGGTGAT CGGGCTGATG ATGGCCCGGA TCCTCGACCT CCCACCGGAG
TCGTACGCTG CGGCGCAGAA CCTCGGCCGG GCGATGCAGT ACGTCAACTT CATCCGCGAC
ATCGCAGAAG ACCTCGCTCT CGGCCGGACC TACTTTCCTC TCGAAGAGAT GGAGGCGTTC
GGGCTTGATG ACCTCTCGGC GGCCGCGGCT TCCCGTGACC CCGGGGGATT TGCAGCATTT
CTCCGGTTCC AGCTCCGGCG CTACCGGGAG TGGCAGGAGG CGGCGGAAGC CGGGTTCGGG
CACATCCCCC GGCGCTACCG GATCCCGATC CGGACGGCGT CGGATATGTA CCGCTGGACG
GCCCGGACGA TCGAGCGCGA CCCGGCCGTC GTCCACCGGC GGAAGGTGAA GCCGTCGGTG
ATCCGGATCG TCTCCGGCGC CGCAACAAAT ACCCTGAAGG CGTGA
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| Protein sequence | MIDRTIYNIF RRGSRTYFYS TLFFPPAVRE DVFSLYSFVR TADDYVDAVP QEIEEFYAFA
DRYAAAEAGE ATGDVVVESF VDLAGRKGFD PAWTTAFLRS MESDIIVGSY RTIRDLEGYL
YGSSEVIGLM MARILDLPPE SYAAAQNLGR AMQYVNFIRD IAEDLALGRT YFPLEEMEAF
GLDDLSAAAA SRDPGGFAAF LRFQLRRYRE WQEAAEAGFG HIPRRYRIPI RTASDMYRWT
ARTIERDPAV VHRRKVKPSV IRIVSGAATN TLKA
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