Gene Memar_0116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_0116 
Symbol 
ID4845994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand
Start bp107007 
End bp108482 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content64% 
IMG OID640114787 
Productphytoene dehydrogenase-related protein 
Protein accessionYP_001046033 
Protein GI126178068 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID[TIGR02734] phytoene desaturase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAGCTG TAATTGTTGG GGCCGGGTTC GGGGGTCTCT CCGTCGCCGC CCTTCTTGCG 
AAGGGCGGCT TCGACGTCAC GGTCGTCGAG AAGAACGAGC GGCCCGGGGG CCGGGCGAGC
ATCCACCGCG ACGGGGGGTT CACGTTCGAC ATGGGGCCGT CGTGGTACCT GATGCCCGAC
GTATACGACC GGTTCTTCGC GGAGTTCGGG AGGAGCCCGG GAGACTACTT CCCGCTCGCG
AGACTCGACC CGTCATACCG GGTCTTCTTC GGGACCGACC GGGTCGCGGA CGTCTCGGCC
GATCTCGAGA AGAACTACGA TCTCTTCGAG TCGTTCGAAC CCGGAGGAGC CGGGAAACTC
CGGGGTTACC TCGCCGGGGC GGAGGAGACC TACCGGACAA CGATGGACGA CCTCCTCTAC
CGGGACTACC GGAGCATCCT CGACTTCTTC GACCGGCGGC TCCTCTCCCG GGGAAGGAAA
CTCCATCCCT TCGAGAACCT GGAGTCCTTC GTCAAGAAGC GCTTCGCAAG CGACGAAGCC
CGTAAAATCG TCCAGTATTC CATCGGTTTC CTCGGCGGGT CGCCGGAAAA CACCCCCTCG
TTCTACCACA TCATGACGCA TATCGACATG AACATGGGCG TGTGGTATCC GGAAGGGGGC
ATGCGGGCGG TGGTCGAGGC TCTGGTCTCG CTCGGCCGGG AGTTCGGGGT CGAGTACCGC
TACAACGAAC CGGCGACCGC CATCGACGTG GAAAGGGGGC TCGCACGCCG GGTCGTCACC
CCTCTCGGTG CGCACGAGAC CGATATCGTC GTGGTGAACG CGGACTACCC GTTCACGGAA
CTCTCCCTCC TCCCCGAAGG CTCCCGGTCA TACTCCGCCT CCTACTGGAA AAAGAAGGTC
CTCGCCCCGT CCACGTTCGT CGCCTATCTC GGCGTAGACC GGGTGGTCGA GGGGCTCGCG
CACCATAACG TCTTCCTCGA GCCCGACTGG GAGGAGGGGT TTGAGACGAT CTTCGACCCC
AAGAAAGCCG CCTGGCCGGA GAATCCTTCA TTCTACGTCA ACGTCCCCTC GCGGACGGAT
ACGACCGCCG CCCCGAGCGG CACCGATACG CTCTTCGTCC TCGCGCCCCT CGCCCCCGGC
ATCGAGGATA CACCGGAACT CCGCGAGCGG TTCTACGACC TCCTCATGAG CCGGATGGAG
GAGATCCTCG GCGAGAATAT CCGTGACTCG GTCGTGTCCC GGCGAATCTT CGCGCTCTCG
GACTTTTCGA ACCGTTACAA CGCCTACCGG GGCACGGCGC TCGGTCTCTC CCACACCCTC
CGGCAGACGG CGCTCTGGCG CCCCGCACAC CAGAGCAAGC GTGTCAGGAA CCTCTACTAC
ACCGGCCAGT ATACCCACCC GGGGATCGGG GTGCCGATGA CCCTGATATC CTCCCAGATC
GTCGCCCGCG AGTTGACCGA CCGTTACCGC CGGTGA
 
Protein sequence
MRAVIVGAGF GGLSVAALLA KGGFDVTVVE KNERPGGRAS IHRDGGFTFD MGPSWYLMPD 
VYDRFFAEFG RSPGDYFPLA RLDPSYRVFF GTDRVADVSA DLEKNYDLFE SFEPGGAGKL
RGYLAGAEET YRTTMDDLLY RDYRSILDFF DRRLLSRGRK LHPFENLESF VKKRFASDEA
RKIVQYSIGF LGGSPENTPS FYHIMTHIDM NMGVWYPEGG MRAVVEALVS LGREFGVEYR
YNEPATAIDV ERGLARRVVT PLGAHETDIV VVNADYPFTE LSLLPEGSRS YSASYWKKKV
LAPSTFVAYL GVDRVVEGLA HHNVFLEPDW EEGFETIFDP KKAAWPENPS FYVNVPSRTD
TTAAPSGTDT LFVLAPLAPG IEDTPELRER FYDLLMSRME EILGENIRDS VVSRRIFALS
DFSNRYNAYR GTALGLSHTL RQTALWRPAH QSKRVRNLYY TGQYTHPGIG VPMTLISSQI
VARELTDRYR R