| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_5491 |
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| Symbol | |
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| ID | 7119274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium chloromethanicum CM4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011758 |
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| Strand | - |
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| Start bp | 116385 |
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| End bp | 118322 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643528164 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_002424160 |
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| Protein GI | 218533345 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.264934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACGG AGCCTCGCTT CTCCGCGCCC GAGACCCTGC GCGCTATCGC CGGCGCGGGG
CGTGCCCTGG GCCGCCACCA GCGCCGGGAC GGCCACTGGG TCTTCGAGTT GGAGGCGGAC
GCGACCATCC CGGCCGAGTA CGTGCTCCTG GAGCACTACA TGGACCGCAT CACGCCCGAG
CGGCAGGCCC GGATCGGAGC CTACCTCCGG CGCATCCAGG GCGAGCATGG CGGCTGGCCC
ATGTTCCACG CGGGCGAGTT CAACATCTCG GCCAGCGTGA AGGCCTACTG CGCGCTGAAG
GCCATCGGCG ACGATCCGCA AGCGCCGCAT ATGGTCCGGG CCCGCCAGGC CATCCTCGGC
CATGGGGGCG CGGAGCGCGC CAACGTCTTC ACGCGCATCC AACTCGCCCT GTTCGGCGCC
ATCCCCTGGC GCGGCGTGCC GGTGATGCCG GTCGAGATCA TGCACCTGCC CAAGTGGTTC
TTCTTCAACA TCTGGGCGAT GTCCTACTGG GCCCGCACCT GCGTGGTGCC GCTCCTCGTG
CTGCAGGCGC GGAAGCCCCG TGCCCGCAAC CCGCGCCAGG TGAGCTTCGA CGAGATCTTC
CGGACCGAGC CGGACGAGGT CCGAGACTGG ATCCGCGGCC CCTACCGCTC ACGCTGGGGC
GTGGTGTTCA AGCACATCGA CACGGTGCTG CGCTGGACCG AGCCCCTGTT CTCGAAGGTC
GCGCGCGAGA GCGCCATCTT CAAGGCCGTC GACTTCGTGG AGGAGCGTCT GAACGGCGAG
GACGGGCTCG GCGCGATCTA CCCGGCCATG GCCTACGCGC TGATGATGTA CGACGTGCTC
GGCTACCCCG AGGACGACCC GCGCTGCGTC ACGATCTGGA AGGCCATCGA CAAGCTTCTC
ATCGAGACGG ACGAGGAGGT TTACTGCCAG CCCTGCGTCT CGCCCGTATG GGACACGAGC
CTGTCCGGGC ATGCCATGAT CGAGGCGGCG CGCACCGGGG GCATCGAGGC CCAAGCGGAG
CTCGACGCCG CGTGCGACTG GCTGGTGGCG CGCCAGGTCA AGGACGTGCG GGGCGACTGG
GCCGAGACGC GGCCGGACGC CGAGCCCGGC GGCTGGGCCT TCCAGTACCG CAACGACCAC
TACCCCGACG TCGACGACAC GGCGGTGGTC GCCATGCTGC TCCACCGCAA CGGCCGGCCC
GAGCACGCGG AGGCAATCGA GAAGGCGCGC CGCTGGGTCG TCGGCGTGCA GAGCCGCAAT
GGAGGCTGGG GTGCCTTCGA CGCCGACAAC GACCGCGAGT TCCTCAACCA CATCCCGTTC
TCGGACCACG GCGCGCTGCT CGACCCGCCG ACCGCCGACG TGACCGGCCG CTGCATCTCC
TTCCTGTCCC AGCTCGGGCA CGAGGAGGAC CGGCCGGTGA TCGAGCGCGC CTTGGCCTAC
CTTCGGGCCG AACAGGAGCG CGACGGCAGT TGGTACGGGC GCTGGGGCAC CAACTACGTC
TACGGCACCT GGACGGTCCT GTGCGGCCTG AACGCGGCCG GCATCCCGCA CGACGACCCG
ATGGTGCGCC GGGCCGTGGA CTGGCTGGTC TCGATCCAGC GCGCGGACGG CGGCTGGGGC
GAGGACGAGC GCAGCTACGA CGTCGGCCAC TACGTCGAGA ACGCCGAGAG CCTGCCTTCG
CAGACGGCCT GGGCGATGCT CGGCCTGATG TCGGTCGGCC AGGCCGACCA CCCCGCCGTC
CTACGCGGTG CGGCCTACCT GCAGCGCACG CAAGGGCCGG ACGGCGAGTG GCAGGAGCGG
GCCTACAACG CCGTCGGCTT CCCGCGCGTG TTCTACCTCA AGTATCACGG CTACCGGCTG
TTCTTCCCAC TGTTCGCCCT CTCGCGCCTT CACAACCTAC AACGGGGCAA CAGCCGGGAG
GTCAGCTTCG GCTTTTGA
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| Protein sequence | MNTEPRFSAP ETLRAIAGAG RALGRHQRRD GHWVFELEAD ATIPAEYVLL EHYMDRITPE
RQARIGAYLR RIQGEHGGWP MFHAGEFNIS ASVKAYCALK AIGDDPQAPH MVRARQAILG
HGGAERANVF TRIQLALFGA IPWRGVPVMP VEIMHLPKWF FFNIWAMSYW ARTCVVPLLV
LQARKPRARN PRQVSFDEIF RTEPDEVRDW IRGPYRSRWG VVFKHIDTVL RWTEPLFSKV
ARESAIFKAV DFVEERLNGE DGLGAIYPAM AYALMMYDVL GYPEDDPRCV TIWKAIDKLL
IETDEEVYCQ PCVSPVWDTS LSGHAMIEAA RTGGIEAQAE LDAACDWLVA RQVKDVRGDW
AETRPDAEPG GWAFQYRNDH YPDVDDTAVV AMLLHRNGRP EHAEAIEKAR RWVVGVQSRN
GGWGAFDADN DREFLNHIPF SDHGALLDPP TADVTGRCIS FLSQLGHEED RPVIERALAY
LRAEQERDGS WYGRWGTNYV YGTWTVLCGL NAAGIPHDDP MVRRAVDWLV SIQRADGGWG
EDERSYDVGH YVENAESLPS QTAWAMLGLM SVGQADHPAV LRGAAYLQRT QGPDGEWQER
AYNAVGFPRV FYLKYHGYRL FFPLFALSRL HNLQRGNSRE VSFGF
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