Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mchl_4386 |
Symbol | rpoB |
ID | 7117700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium chloromethanicum CM4 |
Kingdom | Bacteria |
Replicon accession | NC_011757 |
Strand | + |
Start bp | 4630736 |
End bp | 4634866 |
Gene Length | 4131 bp |
Protein Length | 1376 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643527085 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_002423090 |
Protein GI | 218532274 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.282768 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAATA CGCTGGTCGG TCGCAAGCGC ATTCGCAAGT TCTTCGGTAA GATCCGGGAA GTCGCCGAGA TGCCGAACCT CATCGAGGTT CAAAAGGCGT CCTACGACCA GTTCCTGATG GTGGACGAGC CCGAGGGCGG GCGTGCCGAC GAGGGCCTGC AGAGCGTCTT CAAGTCGGTC TTCCCGATCT CCGACTTCGC CTCGACGGCG CTGCTCGAGT TCGTGCGGTA CACCTTCGAA CAGCCGAAAT ACGACGTCGA CGAGTGCCGC CAGCGCGGCA TCACCTTCGC GGCCCCGCTC AAGGTGACGC TGCGGCTCAT CGTGTTCGAT GTGGACCCCG ATACCGGCGC CAAGTCGGTC AAGGACATCA AGGAGCAGGA TGTCTACATG GGCGACATGC CGCTCATGAC GGACAACGGT ACCTTCATCG TCAACGGCAC CGAGCGCGTC ATCGTCTCGC AGATGCACCG CTCGCCGGGC GTGTTCTTCG ACCACGACAA GGGCAAGACC CACTCGTCCG GCAAGCTGCT GTTCGCCGCC CGCATCATCC CCTACCGGGG CTCCTGGCTC GACGTCGAAT TCGACGCCAA GGACATCGTG CACGTGCGCA TCGACCGCAA GCGCAAGCTG CCGGTCACCT CGCTGCTGTT CGCGCTCGGC CTCGACGGCG AAGAGATCCT CTCGACCTTC TACAACCGCG TCGCCTACCA GCGTGACGGG GCGGATTGGC GCGTGCCGTT CGACGCCGAG CGCCTCAAGG GCTTCAAGGC TTCGGTCGAT CTCATCGACG CCGATTCCGG CGAGGTCGTG CTGGAGGCGG GCAAGAAGCT CAACGCCCGC AACGCGCGTC TGATCGGCGA GAAGGGCACC AAGTTCCTGC GCGCCGCCGA CGAGGATCTG ATCGGCCAGT ACATCGCCGA AGACCTCGTC AACATGAAGA CGGGCGAGAT CTGGGCCGAG GCCGGCGACG AGATCTCCGA GAAGCTCCTC AAGAGCCTCG ACGACGTCGG CGTCACCGAG CTGCCCGTGC TCGACATCGA CCACGTCAAT GTCGGCCCCT ACATCCGCAA TACGCTAGCT GTGGACAAGA ACTCCGCCCG TGAAGGCGCG CTGTTCGACA TCTACCGCGT GATGCGTCCC GGTGAGCCGC CGACGCTCGA CACCGCCGAG GCGATGTTCC ACTCGCTGTT CTTCGATTCC GAGCGCTACG ACCTCTCGGC GGTCGGCCGC GTGAAGATGA ACATGCGCCT CGACCTCGAC GCCGCCGACA CCGTGCGGAC GCTGCGCCGC GAGGACATGC TCGCGGTCGT CAAGGCGCTG GTCGACCTGC GCGACGGCAA GGGCGAGATC GACGACATCG ACCACCTCGG CAACCGCCGT GTCCGCTCGG TCGGCGAGCT GATGGAGAAC CAGTACCGTC TGGGCCTCCT GCGGATGGAG CGCGCCATCA AGGAGCGCAT GTCCTCGGTC GATATCGACA CGGTGATGCC GCAGGATCTC ATCAACGCGA AGCCCGCCGC GGCGGCGGTG CGCGAGTTCT TCGGCTCGTC GCAGCTCTCG CAGTTCATGG ACCAGACCAA CCCGCTGTCG GAAGTGACGC ACAAGCGCCG CCTCTCGGCG CTTGGCCCGG GCGGTCTGAC CCGCGAGCGC GCCGGCTTCG AGGTGCGCGA CGTGCACCCG ACCCATTACG GCCGCATCTG CCCGATCGAG ACCCCGGAAG GCCCGAATAT CGGCCTGATC AACTCGCTGG CGACCTTCGC CCGCGTGAAC AAGTACGGCT TCATCGAGAC GCCGTTCCGC CGGGTGAAGG ACGGCGTGGT GACCGACGAG GTCGCCTACC TCTCCGCCAT GGAAGAGGCG AAGTACTACG TCGCCCAGGC CAATGCCGGC ATGGACGAGG GCCGTAAGCT GACGGACGAC CTCGTGGTCT GCCGCCGCGC GGGTGAGGTC ATCGTGGTCG CCCCCGACCG CGTCGATCTC ATGGACGTGT CGCCGAAGCA GCTCGTCTCG GTCGCCGCGG CGCTGATCCC GTTCCTCGAG AACGACGACG CCAACCGCGC GCTGATGGGC TCGAACATGC AGCGCCAGGC GGTGCCGCTG GTTCGCGCCG ATGCGCCCTT CGTTGGCACG GGTATGGAGG CCGTGGTCGC CCGCGACTCC GGTGCTGCCA TCGCTGCCCG CCGCTCCGGC ATCGTCGATC AGGTGGACGC CACCCGTATC GTCATCCGCG CCTCGGAAGA GACCGACCCG ACCAAGCCCG GCGTCGACAT CTACCGCCTG CAGAAGTTCC AGCGCTCCAA CCAGTCGACC TGCATCACGC AGAAGCCGCT GGTGCGCGTC GGCGAGCCGG TGAAGAAGGG CGAGATCATC GCCGACGGTC CCTCGACCGA GTTCGGTGAG CTCGCGCTCG GCCGCAACGT GCTCGTCGCG TTCATGCCGT GGAACGGCTA CAACTTCGAG GACTCGATCC TGCTCTCCGA GCGGATCGTG AAGGATGACG TGTTCACCTC GATCCACATC GAGGAATTCG AGGTGATGGC CCGCGACACC AAGCTGGGTC CGGAGGAGAT CACCCGCGAC ATCCCGAACG TCTCGGAAGA GGCGCTCAAG AACCTCGACG AGGCCGGCAT CGTCTATATC GGCGCCGAGG TGCATGCCGG CGACATCCTC GTCGGCAAGA TCACGCCGAA GGGCGAGAGC CCGATGACGC CGGAGGAGAA GCTCCTGCGC GCCATCTTCG GCGAGAAGGC CTCGGACGTG CGCGACACCT CGCTCCGGGT TCCCCCGGGC GTGACCGGCA CGATCGTCGA GGTGCGGGTG TTCAACCGCC ACGGCGTCGA CAAGGACGAG CGCGCCCAGG CGATCGAGCG CGAGGAGATC GAGCGTCTCG CCAAGGACCG CGACGACGAG CAGACCATCC TCGACCGCAA CACCTACGCC CGCTTGGCCG AGGTGCTGAT CGGTCAGTCG CCGATCGCCG GCCCGAAGGG CTTCCGCAAG GACACCACGC TGACCCGCGA GATCATCAGC GAGTATCCCC GCTCGCAATG GTGGCAGTTC GCCGTCGTCG ACGACCGTAT GATGACGGAA ATCGAGGCGA TGCAGAAGCA GTACGACGAG TCGAAGAAGC GCCTTGAGCA GCGCTTCCTC GACAAGGTCG AGAAGCTGCA GCGCGGCGAC GAGCTTCCGC CCGGCGTCAT GAAGATGGTC AAGGTCTTCG TGGCGGTGAA GCGCAAGATC CAGCCCGGCG ACAAGATGGC CGGCCGCCAC GGCAACAAGG GTGTCGTGTC GCGCATCGTG CCGATCGAGG ACATGCCGTT CCTCGAAGAC GGCACGCATG CCGACATCGT GCTCAACCCG CTCGGCGTGC CCTCGCGCAT GAATGTCGGC CAGATCCTGG AAACCCATCT GGGCTGGGCG GCTGCGGGCT TGGGTCGCAA GGTCTCCAAG GCGGTCGATG CCTATCTGAA GAACCAGGAT ATCGCGCCGC TGCGGGCTGA GATGGAAGCG ATCTACTCGC CGTCCGAACT CGAGGGGCTG TCCGACGAGG CTCTGGCCGA GGCGGGCAAC AACGTACGCC GCGGCGTGCC GATGGCCACT CCGGTGTTCA ACGGCGCCAA GGAAGCCGAC ATCGAGACGA TGCTGGAGAT GGCCGGGCTC GACCGCTCGG CGCAGTCGAC GCTCTACGAC GGGCGGACCG GCGAGCCCTT CGACCGCAAG GTCACCATGG GCTACATCTA CATGCTGAAG CTGCACCACC TCGTGGACGA CAAGATCCAC GCGCGCTCGA TCGGCCCGTA CTCGCTCGTC ACCCAGCAGC CGCTGGGCGG TAAGGCGCAG TTCGGCGGTC AGCGCTTCGG TGAGATGGAG GTCTGGGCGC TGGAGGCCTA TGGCGCGGCC TACACGCTGC AGGAGATGCT TACGGTGAAG TCGGACGACG TGGCCGGCCG CACCAAGGTC TACGAGGCGA TCGTCCGCGG CGACGACACG TTCGAGGCCG GCATCCCCGA ATCCTTCAAC GTGCTCGTCA AGGAGATGCG TTCGCTCGGC CTCAACGTCG AGCTCACCTC CTCCAAGCAG CAGCAGGCGG CCAACGACCA GATCGAGCCG CCGGCCGACG CCGCCGAGTA A
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Protein sequence | MANTLVGRKR IRKFFGKIRE VAEMPNLIEV QKASYDQFLM VDEPEGGRAD EGLQSVFKSV FPISDFASTA LLEFVRYTFE QPKYDVDECR QRGITFAAPL KVTLRLIVFD VDPDTGAKSV KDIKEQDVYM GDMPLMTDNG TFIVNGTERV IVSQMHRSPG VFFDHDKGKT HSSGKLLFAA RIIPYRGSWL DVEFDAKDIV HVRIDRKRKL PVTSLLFALG LDGEEILSTF YNRVAYQRDG ADWRVPFDAE RLKGFKASVD LIDADSGEVV LEAGKKLNAR NARLIGEKGT KFLRAADEDL IGQYIAEDLV NMKTGEIWAE AGDEISEKLL KSLDDVGVTE LPVLDIDHVN VGPYIRNTLA VDKNSAREGA LFDIYRVMRP GEPPTLDTAE AMFHSLFFDS ERYDLSAVGR VKMNMRLDLD AADTVRTLRR EDMLAVVKAL VDLRDGKGEI DDIDHLGNRR VRSVGELMEN QYRLGLLRME RAIKERMSSV DIDTVMPQDL INAKPAAAAV REFFGSSQLS QFMDQTNPLS EVTHKRRLSA LGPGGLTRER AGFEVRDVHP THYGRICPIE TPEGPNIGLI NSLATFARVN KYGFIETPFR RVKDGVVTDE VAYLSAMEEA KYYVAQANAG MDEGRKLTDD LVVCRRAGEV IVVAPDRVDL MDVSPKQLVS VAAALIPFLE NDDANRALMG SNMQRQAVPL VRADAPFVGT GMEAVVARDS GAAIAARRSG IVDQVDATRI VIRASEETDP TKPGVDIYRL QKFQRSNQST CITQKPLVRV GEPVKKGEII ADGPSTEFGE LALGRNVLVA FMPWNGYNFE DSILLSERIV KDDVFTSIHI EEFEVMARDT KLGPEEITRD IPNVSEEALK NLDEAGIVYI GAEVHAGDIL VGKITPKGES PMTPEEKLLR AIFGEKASDV RDTSLRVPPG VTGTIVEVRV FNRHGVDKDE RAQAIEREEI ERLAKDRDDE QTILDRNTYA RLAEVLIGQS PIAGPKGFRK DTTLTREIIS EYPRSQWWQF AVVDDRMMTE IEAMQKQYDE SKKRLEQRFL DKVEKLQRGD ELPPGVMKMV KVFVAVKRKI QPGDKMAGRH GNKGVVSRIV PIEDMPFLED GTHADIVLNP LGVPSRMNVG QILETHLGWA AAGLGRKVSK AVDAYLKNQD IAPLRAEMEA IYSPSELEGL SDEALAEAGN NVRRGVPMAT PVFNGAKEAD IETMLEMAGL DRSAQSTLYD GRTGEPFDRK VTMGYIYMLK LHHLVDDKIH ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAA YTLQEMLTVK SDDVAGRTKV YEAIVRGDDT FEAGIPESFN VLVKEMRSLG LNVELTSSKQ QQAANDQIEP PADAAE
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