Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mchl_2218 |
Symbol | |
ID | 7116165 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium chloromethanicum CM4 |
Kingdom | Bacteria |
Replicon accession | NC_011757 |
Strand | + |
Start bp | 2321613 |
End bp | 2322464 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 643524968 |
Product | squalene synthase HpnD |
Protein accession | YP_002420993 |
Protein GI | 218530177 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.674273 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCCA CCGCCACCCC GATGCCGGGA GAGACCCCGG AAGCGGCTGC CCTGCCGGCC GCCGGCTCGT CCTTCTACAC GGCGATGCGC CTGCTGCCGA AGGAACGGCG TGAGGCGATG TACGCGGTCT ACGCCTTCTG CCGGGTCGTG GACGATGTCG CCGACGATGG CGGCCCGCGC GAGGTCCGCG CGGCCGAGCT CGACCGCTGG CGGGCCGATA TCGACGCGCT CTACGCCGGC CATCCCCCTG CGCGGGTGAA GCCGCTCGAA GAGCCGATGC GCCGCTTCGA CCTCAAGCGC GAGGACTTCC AGGCCGTGAT CGACGGCATG GCGATGGACG CGGAGGAGGA CATCGTCGCC CCGTCGGAAG CCAAGCTCGA CCTCTATTGC GACCGGGTCG CGAGCGCCGT CGGGCGGCTC TCGGTGCGCA TCTTCGGCAT GCCGGAGGCG GACGGAATCC GCCTCGCGTG GCACCAGGGC CGGGCGCTCC AGCTCACCAA CATCCTGCGT GACATCGACG AGGATGCGGA GCGCGGGCGC CTCTACCTGC CGATGGAGAA ATTCCACAAG ATCGGGCTGA TGAACCCGAC CCCGCAGAGC GCGCTGGCGC ATCCGCGCCT CGGCGAGGTC TGCGCGGCGG TCGCTGCCGA AGCGGAAGAG CATTACCGCC AGACTTGGGC GATCATCGAG CGCAGCCCGC GTCGCGCCAC CAAGGCGGCC CGCCTGATGG CGGCGGCCTA CCGGCTCTAC CTCGACGCCG TGGTCAAGCG TGGCTGGGCG GCCCCGCGGG CGCGGGTGAA GCCGGGCAAA TTCCCCCTTC TCCTCGTCGC TTTGCGCCAC GGGATTCTGT GA
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Protein sequence | MSATATPMPG ETPEAAALPA AGSSFYTAMR LLPKERREAM YAVYAFCRVV DDVADDGGPR EVRAAELDRW RADIDALYAG HPPARVKPLE EPMRRFDLKR EDFQAVIDGM AMDAEEDIVA PSEAKLDLYC DRVASAVGRL SVRIFGMPEA DGIRLAWHQG RALQLTNILR DIDEDAERGR LYLPMEKFHK IGLMNPTPQS ALAHPRLGEV CAAVAAEAEE HYRQTWAIIE RSPRRATKAA RLMAAAYRLY LDAVVKRGWA APRARVKPGK FPLLLVALRH GIL
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