Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mchl_1980 |
Symbol | |
ID | 7118680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methylobacterium chloromethanicum CM4 |
Kingdom | Bacteria |
Replicon accession | NC_011757 |
Strand | + |
Start bp | 2062384 |
End bp | 2064150 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 643524733 |
Product | type I secretion system ATPase |
Protein accession | YP_002420758 |
Protein GI | 218529942 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.15427 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTTCCA GAGATCAGAA AAAGCTCGCT CAGCAGCGTT GTGCCGAGCA GCTGACCCAA AGCGTTCGGG GGCCCTTCGT CTTTCTGTTC GGGATGTCCG GGATCATCAA CATCCTGGCG TTGACCGGCT CGTTCTACAT GCTGCAGGTC TACGACCGCG CCCTGCCGAG CGGGAGCCTG CCGACGCTCG TCGGGCTGTC GATCCTCGCC GTCGGACTCT ACCTGGCGCA GGGCCTGTTC GACGTTCTCC GCTCGCAGAT CCTGGTTCGC CTCGGGGCGC AGTTCGACCG CCGGGTCGCT CCGCTGGCGC AGCGGGTCGG GATCGACATG CCGCGCTTCG GCTTCTCGAC CGCAGAGGCG ATGGAGCGCG GCCGCGACGT CGATACGGTG CGCGGCTTCC TCGGCAGCCC CGGTCTCGTC GCCCTGTTCG ACCTGCCGTG GGTGCCGGTC TTCCTCGTCT TCGTCTACAT GCTGCACCCC TATCTCGGCG CGCTCACCGT CGCGGGGGCG GTCGTCCTCG CGCTGCTGAC CATCCTCGCC GAGCTCCTGA CCCGGCGCTG GACCGGCGCG ACGCAGCAGG CCGTGGTGGC CCGCAACGCC ATCGCGGACT CGAACGCGCG CAGCGCCGAC GTGCTCAAGG CGATGGGCTT CGCCGACCGG GCCGTGGACC GCTACCGCCG CGCCAACGAC GAACACCTCG ACCTGCAGAC CCGCACCACC GACATCAGCG GCACGTTCGG GGCGATCGCG CGCGTCCTGC GCATGATCCT GCAATCGGCC GTGCTCGGGC TCGGCGCCTA CCTCGTCATC GGCGGCGAAC TCTCTGCCGG GGCGATCATC GCGGCTTCGA TCACCTCCGC CCGCGCCATG GCGCCCATCG ACCAGGCGAT CGGCAACTGG AAGGTCATCC TGGCCGCGCG GACCGCCTTC CGGCGCTTGA AGGAGACCGT GATCGCCCTG GCCGCCGCCG AGCCGCCGAT GACGCTGCCG CCGGCGCACC GGTCGCTCAG GGTCGGCCAC ATCACGGTCG CGGCCCCCGG CTCGGGTCGC GTGCTCCTCT CGGATGTCGG GTTCGAACTC AAGGCCGGGC AGGCGCTCGG CGTCATCGGA CCGAGCGGCG GCGGCAAGAC CACCCTCGGC CGCGCGCTGA CCGGCATCTG GCCGCTGCTG CGCGGCAGCG TGCGGTTCGA CGAGGCCGAC CTGCCGCAAT GGGACGAGGC GAGCCTGGGT GGGATGATCG GCTACCTGCC TCAGGAGGTC TGCCTCCTCG ACGCGACGGT CGAGGAGAAC ATCTCGCGCT TGGCCGAGGA CAGCAATCCA GCGCTGGTCG TGGCGGCCGC GCAGGCGGCC GGCGTGCACG AGATGATCCT GCGGATGCCC GACGGCTACA AGACCGAACT CGGACCGCTC GGGACGGCGC TCTCGGGCGG GCAGCGGCAG CGGATCGCTC TCGCCCGCGC GCTCTACGGC AATCCCTTCC TCGTCGTCCT CGACGAGCCG AACGCGAACC TCGATGCCGA GGGCGAGGCT GCGCTCGCCG CGGCGATCCA GGGCGTGCGT GCCCGCGGCG GCCTCGCGAT CGTGATCGCC CACCGCCCGA GCGTGCTGGC GGCCGTGGAT CTGATCGCCG TGATCCAGGA CGGCAAGCTC ACGGCATTCG GCCCGAAGGA GGCGATCCTC GGCAAGGCCG CCCGCGACGG TGCGGCCAAG CCCGACAGCG CCCAGGACAA CAGGGAGCGC TCCATGCCGG AGCGGGTGCC CGCATGA
|
Protein sequence | MRSRDQKKLA QQRCAEQLTQ SVRGPFVFLF GMSGIINILA LTGSFYMLQV YDRALPSGSL PTLVGLSILA VGLYLAQGLF DVLRSQILVR LGAQFDRRVA PLAQRVGIDM PRFGFSTAEA MERGRDVDTV RGFLGSPGLV ALFDLPWVPV FLVFVYMLHP YLGALTVAGA VVLALLTILA ELLTRRWTGA TQQAVVARNA IADSNARSAD VLKAMGFADR AVDRYRRAND EHLDLQTRTT DISGTFGAIA RVLRMILQSA VLGLGAYLVI GGELSAGAII AASITSARAM APIDQAIGNW KVILAARTAF RRLKETVIAL AAAEPPMTLP PAHRSLRVGH ITVAAPGSGR VLLSDVGFEL KAGQALGVIG PSGGGKTTLG RALTGIWPLL RGSVRFDEAD LPQWDEASLG GMIGYLPQEV CLLDATVEEN ISRLAEDSNP ALVVAAAQAA GVHEMILRMP DGYKTELGPL GTALSGGQRQ RIALARALYG NPFLVVLDEP NANLDAEGEA ALAAAIQGVR ARGGLAIVIA HRPSVLAAVD LIAVIQDGKL TAFGPKEAIL GKAARDGAAK PDSAQDNRER SMPERVPA
|
| |