Gene Mboo_1440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMboo_1440 
Symbol 
ID5411563 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Methanoregula boonei 6A8 
KingdomArchaea 
Replicon accessionNC_009712 
Strand
Start bp1474895 
End bp1476277 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content53% 
IMG OID640868675 
ProductPKD domain-containing protein 
Protein accessionYP_001404601 
Protein GI154150983 
COG category[R] General function prediction only 
COG ID[COG3291] FOG: PKD repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.094364 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.00229761 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTTGCC TCATAAAAAA GAAGAAAACT GATTGCGGAA GATCCCTTGC GTTTGCCGGA 
TACGGCCTTC TTACGGGATG CATCTTTCTG CTGGGTCTCC TTTGCCTGAT CCTGCCGGTG
GCAGCAGAAA CCTACACAAC CGTCCCGGTT GCCTCCTTTA CTGCCTCGCC AGCATCGGGT
ACCGCACCGC TTACGGTTAC TTTTACCGAT GCTTCCGCGA ATGCGACCTC GTGGAGCTGG
AGTTTTGGTG ACGGGAATAC AAGTACCACG GAAAACCCAT CGTGGACGTA CACCTCAGCA
GGAACCTACA CCGCGACACT TACCTCCACC AACTCCTTCG GGAGCAACTC AACTACCAAA
ACCATAACCG TGAAAAGCGC AGTGACTACT CCGGTCTCCT CCTTTTCTGC ATCCGCGACA
TCGGGTACCG CACCGCTTAC GGTCACTTTC ACCGATACCT CTACGAACTC TCCTACGTCA
TGGAGCTGGA TCTTCGGTGA CGGAAATACG AGTACCTCGG AAAGTCCGTC GTGGACATAT
ACCTCGGCAG GGACATATAC CGTGTACCTG ACCGCAGGGA ATTCAGCAGG ACAGTCAACA
AGTTACAAGG TCATTACGGT GAGCTCGGCG ACAACCACTC CGGTAGCAAG TTTCACCTCA
AATGTTACCT CGGGAGTGCT TCCGTTCGCG GTCCAGTTCA ACGACACATC GACCAACACG
CCGACCTCGT GGAGCTGGGT CTTTGGCGAT GGGTATACCA GTACCACCGA GAATCCGGTA
CATACGTATA CTTCCGCAGG GACCTACACG GTTTACCTCA CGGCAGCAAA TTCTGCGGGA
AGCAACGTCA CCTATGTGTC GGATTACATC ACAGTGACTG CAAACGCAAC ACCCGTAGCG
AGTTTTTCCA GTAATGTCTC ATCAGGAACT GTGCCGTTTG CAGTCCAGTT TAATGACACG
TCAACCAACA CACCGACCTC GTGGTACTGG GAGTTTGGTG ACGGGTACGT AAGCTCTGTT
GAGAATCCGG TTCATACCTA CTCGGTATCC GGAGTGTATA CGGTCACCTT TACCGCCACG
AATGGTGAGG GGAGCAATGT GACCACAGAA GAAGATTATA TTACTGCAAG TTCAGCGGCA
ATATCTTCGA CATATGTTGC CACTCCCCTG CCAACTTCTG CCGTCACCCC GCTGTTTACC
GCTGCCCCGA CCTACGCGAT CACTACCTCT GCCACAACCA CTTCATCAGT TGATGACTGG
CTTGCAAAGC AGAACGCCAT CATCACCACA GCCACGACAA AAAAAGCTCC GGGATATGAT
TTCCCTGTTG CCCTTGCCGG ATTCGCGGTG GTTGCAGGGA TAGTGGTATT CAGGAGGCAG
TAA
 
Protein sequence
MICLIKKKKT DCGRSLAFAG YGLLTGCIFL LGLLCLILPV AAETYTTVPV ASFTASPASG 
TAPLTVTFTD ASANATSWSW SFGDGNTSTT ENPSWTYTSA GTYTATLTST NSFGSNSTTK
TITVKSAVTT PVSSFSASAT SGTAPLTVTF TDTSTNSPTS WSWIFGDGNT STSESPSWTY
TSAGTYTVYL TAGNSAGQST SYKVITVSSA TTTPVASFTS NVTSGVLPFA VQFNDTSTNT
PTSWSWVFGD GYTSTTENPV HTYTSAGTYT VYLTAANSAG SNVTYVSDYI TVTANATPVA
SFSSNVSSGT VPFAVQFNDT STNTPTSWYW EFGDGYVSSV ENPVHTYSVS GVYTVTFTAT
NGEGSNVTTE EDYITASSAA ISSTYVATPL PTSAVTPLFT AAPTYAITTS ATTTSSVDDW
LAKQNAIITT ATTKKAPGYD FPVALAGFAV VAGIVVFRRQ