| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1293 |
|---|
| Symbol | |
|---|
| ID | 5412051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1315746 |
|---|
| End bp | 1316444 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640868522 |
|---|
| Product | cobalamin biosynthesis protein CbiM |
|---|
| Protein accession | YP_001404454 |
|---|
| Protein GI | 154150836 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0310] ABC-type Co2+ transport system, permease component |
|---|
| TIGRFAM ID | [TIGR00123] cobalamin biosynthesis protein CbiM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0034572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0275766 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACATCA TGGAAGGATA CTTACCCCTG AACTGGTGCA TCTTCTGGTA TATTGTATCT
GCACCGTTCA TCATCTATGG AATTTATCTG CTGAACAAAC AGGTGAAGGA ACACCGTGAG
ACCCTCTCGC TTCTTGCGGT TTCCGGTGCT TTTATCTTCC TGCTCTCGTC GCTGAAAATG
CCCTCTCCGG TAGTGGGCAG CTGCTCCCAC CCTACGGGGA CCGGGCTATC GACCGTCCTC
TTTGGCCCGT TCATCACCTG CGTTCTCAGC GCCATCGTAC TTATATTCCA GGCACTTTTC
ATGGCCCACG GGGGGATTAC CACGCTCGGG GCCAATGACT TCTCGATGGG AATTGCCGGG
CCGCTCCTCG GGTATCTGGT ATACCGGGTG GCAAAGAAAG TGAATCTGAA CATATTCGTA
AACATCTTCC TCGTCGCATT TGTTGCAGAT CTCTTTACGT ATGTTATCAC GGCAATCGAG
CTTGCCGCGG CCTTCCCGGC AACGCACGGC GGTTTCCTGG TCTCTTTTGA AACATTCTTT
GCAATCTATG CAGTTACCCA GGTTCCCCTT GCGATCGTTG AAGGACTCCT TATCGCGCTC
GTGTTCAAAT ATATCGTCCA GAGCCGGGGC GACATTCTCG TTAAACTCAA AGTGCTCACC
CCGGAACAGG TGACAAAAAT TATGGAGGGT TTTAAATGA
|
|---|
| Protein sequence | MHIMEGYLPL NWCIFWYIVS APFIIYGIYL LNKQVKEHRE TLSLLAVSGA FIFLLSSLKM
PSPVVGSCSH PTGTGLSTVL FGPFITCVLS AIVLIFQALF MAHGGITTLG ANDFSMGIAG
PLLGYLVYRV AKKVNLNIFV NIFLVAFVAD LFTYVITAIE LAAAFPATHG GFLVSFETFF
AIYAVTQVPL AIVEGLLIAL VFKYIVQSRG DILVKLKVLT PEQVTKIMEG FK
|
|---|
| |