| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0360 |
|---|
| Symbol | |
|---|
| ID | 5411422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 354537 |
|---|
| End bp | 355679 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640867574 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001403523 |
|---|
| Protein GI | 154149905 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03187] DGQHR domain
[TIGR03233] DNA sulfur modification protein DndB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.102743 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00986478 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTTG CGGCGTTAGA TGAAGTTGAT GATCTGGAGA CTGCGGTATT TTCTTTTCCT
GCAATTCGCG GCACTCAAGC GGGTAGAGAA TATTATTCCG CTATGGTTCA GCTGAAGCTC
GTTCCGACAA TTTTTCGATT CAACGAATCG GAAGTTCCAG CACAGGTTAG AGCACAACGC
GTTCTGAATC ACGCACGGAT TCCAGAAATT GCACACTATA TTATAAGCAA TCCCCACGAC
TACGTTTTTT CATCAATTGC AGCGTCAATA AGTGAAGTTC CGGTAAAATT CGTTCCCGCT
CCACAAGATA ACCCGAATAG CAGAGTCGGA AAAATTATCA TACCCATGGG CGCGAGGGTT
CTCATCAATG ATGGGCAACA CCGAAGAGCG GCAATCGAAT CAGCTCTTAA AGAGCGGCCA
GAGCTTGGCA ATGAAACAAT ATCCGTGGTT TTTTTTATAG ATACAGGATT GAAGCGCAGC
CAGCAGATGT TTTCAGATCT GAACCGTCAC GCTGTGAGAC CGACAAAATC TATAAGCATT
CTTTACGATT CACGAGAGGC ATTCGCTCAA TCTGTACGTG ATATCGCAAC TTCACTTCCA
ATTTTCAAAG ATCTCACCGA ATTTGAAAAA ACATCAATCT CAAACAGATC AAGAAAAATG
TTCACGCTCT CTACGATTTA TCAAGCGACC GCTGCACTTC TCGGAAAGAA GACTAAAGTA
AAAAAAATAA CAAATGATGA GGAAAAACTT GCCTCCAAAT ATTGGAATAT AGTGGCTGAT
AATATTCCCG AGTGGCAACA ATTGATCCGA GGAGATGTTG CCAGCAGTTC ACTTCGTAAT
GATTTCATTC ACGCCCACGG AATCGCTCTT CATGCACTCG GTCTTGCGGG TCATGCCCTC
ATTGAAGAAT ATCCTGATAC TTGGGAAGAA AAATTGGAAA ATCTTCATAA GATTGACTGG
TCTCGTTCAA ATGCAGAGGT CTGGGAAGGG CGTGCAATGA ATAACGGAAC TATATCCAAA
TCCCAGATGA ATCTCGCATT AACCACAAAC TACCTCAAAT ATATCTTAAC CTTACCTCTT
ACGAAAGAAG AAGAAAAAAA TGAAAAGAAA TACCAGACAC AAGTTCGTGG AAAGTTAAGA
TGA
|
|---|
| Protein sequence | MKVAALDEVD DLETAVFSFP AIRGTQAGRE YYSAMVQLKL VPTIFRFNES EVPAQVRAQR
VLNHARIPEI AHYIISNPHD YVFSSIAASI SEVPVKFVPA PQDNPNSRVG KIIIPMGARV
LINDGQHRRA AIESALKERP ELGNETISVV FFIDTGLKRS QQMFSDLNRH AVRPTKSISI
LYDSREAFAQ SVRDIATSLP IFKDLTEFEK TSISNRSRKM FTLSTIYQAT AALLGKKTKV
KKITNDEEKL ASKYWNIVAD NIPEWQQLIR GDVASSSLRN DFIHAHGIAL HALGLAGHAL
IEEYPDTWEE KLENLHKIDW SRSNAEVWEG RAMNNGTISK SQMNLALTTN YLKYILTLPL
TKEEEKNEKK YQTQVRGKLR
|
|---|
| |